RNA id: TCONS_00035171


Basic Information

Item Value
RNA id TCONS_00035171
length 1203
RNA type mRNA
GC content 0.48
exon number 2
gene id XLOC_017791
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 186277 ~ 188930 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgttaTTGATATTTAATTAGACTTACATCCTCTCCCCGAGTGGAGCGTGCACATATAGATGGGTATTATATTGAGTTTGACAGCAGGACATATCACTGATCAGATGGACAGTCTTCAGTGTGATGATGCAGAACACTACTCAGGCTGCTGTTTACATGTATTCCACTGCAGTTGTGTTATGTGCCCCCAGAGTGCGCTGTTTCCGCCGGCTTCTGTCCTCCTGTGGGTCAAAATAACGCCTGATCATCGATGTTCAGTGTCAGTTGGTGAACTCAGAATGGAAACGCTGAACAGATGATGGCTGCGGGAAACACTGAGGAAAGACAGAGGCAGACTGTGAGGACGAGTAAACACTGACGAGTAAATATTAACTTGTTCTCTGTAGCGGTAACAGGACTGAAGGTGGCGGTAATGCGGAGTGAGCCGCTGTTGATCCGCATAGAAGAAGCGCAGAGGATCGGCTGGCTGTAGCGGGTCAGTGTCAGCATGAGCTCCGGgcagagcagcagcagcagcgggaAATCCGGGCCGCAGGAGCCGCCCAGCAGCGCGGCGGAGCCGGCATACAGGAGCCCGGGCCTGCGGGGGGTCAGAACCACATCACTGTTCCGAGCCGTCAACCCGGAGCTGTTCATCCGACCTaataaGCCGGTGATGGCTCTGGGTCTGCTGGCTCTGTCCGTGTGTGTGGGCTATCTGGGTTATCTTCACGCCATCAGAGACAGCGACCAGCAGCTGTATGAGGCCGTGGACAGCGATGGAGAGACCTACATGAGGAGGAGGACCTCCAGATGGGACTGAgagcttcatcttcatcatcaaacCAGCCGAATGATCTACCCGAGCGCTCGTTTGTGTTTGTTGATGATCATGAGCTGGACGTGTTGTGGTTCTCCTCTTTTTGCACTGTGTGTGTTCAAGATTCAGTGTTTGTCCTCACATGTGCTGTGAGGAAACTCTTTCTGTTCAGTACGGTTGGTAGTTTGCTCAGTTTCTGTCTTCCACTGAGAGTCAGGGAAGATTTAAGGTATAGAATAATCctgaataattataaataaaataatgcaacaaAACATGCAATTAGAAGAGCAAACTAACCATAAACACATGAGGGAAATGTTTGAGCTGTATAATACTggataaatgtgtaaataactgTATAATTGGCAaacatattttcaaataaatactttaaGATTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-423 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM8 (small integral membrane protein 8).

Ensembl:

ensembl_id ENSDART00000104784

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036777 lncRNA downstream 3496 182349 ~ 182781 (-) True XLOC_017790
TCONS_00036439 lncRNA downstream 69305 84693 ~ 116972 (-) False XLOC_017787
TCONS_00036776 lncRNA downstream 97996 84692 ~ 88281 (-) False XLOC_017787
TCONS_00036778 lncRNA upstream 214386 403316 ~ 405366 (-) True XLOC_017794
TCONS_00036779 lncRNA upstream 219631 408561 ~ 411919 (-) True XLOC_017795
TCONS_00035176 lncRNA upstream 241071 430001 ~ 432296 (-) True XLOC_017796
TCONS_00036780 lncRNA upstream 341581 530511 ~ 534076 (-) False XLOC_017799
TCONS_00036781 lncRNA upstream 342360 531290 ~ 534064 (-) False XLOC_017799
TCONS_00035168 mRNA downstream 3436 159277 ~ 182841 (-) False XLOC_017790
TCONS_00035169 mRNA downstream 20459 159305 ~ 165818 (-) False XLOC_017790
TCONS_00035170 mRNA downstream 21977 159307 ~ 164300 (-) False XLOC_017790
TCONS_00035167 mRNA downstream 31288 150890 ~ 154989 (-) True XLOC_017789
TCONS_00035166 mRNA downstream 38699 124485 ~ 147578 (-) True XLOC_017788
TCONS_00035173 mRNA upstream 7611 196541 ~ 211920 (-) True XLOC_017792
TCONS_00035174 mRNA upstream 87823 276753 ~ 284865 (-) True XLOC_017793
TCONS_00035175 mRNA upstream 229583 418513 ~ 438646 (-) False XLOC_017796
TCONS_00035177 mRNA upstream 253012 441942 ~ 456998 (-) False XLOC_017797
TCONS_00035178 mRNA upstream 253686 442616 ~ 463786 (-) True XLOC_017797
TCONS_00035199 other upstream 1040858 1229788 ~ 1239603 (-) True XLOC_017810
TCONS_00035230 other upstream 2500618 2689548 ~ 2708120 (-) False XLOC_017830
TCONS_00035232 other upstream 2527019 2715949 ~ 2725519 (-) False XLOC_017831
TCONS_00035252 other upstream 3133674 3322604 ~ 3322820 (-) True XLOC_017842
TCONS_00035253 other upstream 3134636 3323566 ~ 3323782 (-) True XLOC_017843

Expression Profile

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