CI01000135_00578080_00588322


Basic Information

Item Value
gene id CI01000135_00578080_00588322
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 576969 ~ 588543 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000135_00578080_00588322.mRNA
ACTGAAACTAGGAGGAGACAAATAATGTAAAAAACACACTAAATTTACACAGAGAGAGGAATCCGTTTTTCAGTTAAAATCTGTGGACAAACGGGCTTCCGGTAATGGCGGTGGAGTGATCAGTCGTGTTTTTCACCTCTCTCAGTCCACGTTCCTGTTGTTCATTATCTACCTTCACCCTTTCTCAAAATCATTATTTAGACAGACATTGTTAGTTTATCATGCCCAAGCTGTCAAAACAGAACAAGCCGGACCATTCCCGAGGCTTTACGGAAGATTGTACTGATCCAAGCGAGGCTAGTGCTAGCAGTGATCAAGTGGTTAGCCATGAGAGTTTGTTACTTGACTTTTCACATGGTGCTTTGCTTAAGCACATTGCCGAAGTCGTTGCAGAAGAAGCTTCAAATAAATCTAAAGGGGTGGTAATTATATGTCAGCGTAATTTGCGCTTTAAGCTGTTGGATACTTGGGCAGATAGCAAAGTGTCACACGTTTTGTCGGTCTGGAGAGCAGCAGAAAAAGTTTGTGATATCCGCTTTTATTGGAATCTCTACTCTCCTATCTTTAATAATGAAGGTTTGCTCATTGGAGATAGAGAGCGAAGCATCTCTCGAGGAGCCACCTCACTCTTCTGTCTGAACAACACTTTCACAACCGTTACGGAGTCCCTGAATAGACATGATCAACCAATGAATGATGAACTACAGAGAGTCAAAGACCGACACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTTGAGGGAATGAAACTCCAAGAGAATGAAATCCTCCTGAACAGGATCTACACACAGCTCTACATCATAGAGAGAGAGAGTGAAGGAGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAAACAGCCAGAACACAACACTCACAAGACACTCCAATCGACTGCAATGACATCTTTAAAGCCTCACCTGAACCAGGATGTGAAGAGAAAGACAAAATCAAGGCTGTTCTTACTAAAGGCATCGCTGGAATCGGAAAAACCGTCTCTGTGCAGAAGTTCATTCTGGACTGGGCCGAGGGAAAAGCCAATCAGGATGTAGATTTCATGTTTGTGCTTCCATTTCGAGAGCTGAACTTGATCCGAGATCATCAGTATAGTCTTCACACACTTCTGCTGGACTTTCATCCTGAACTTCAAGATCTGGACTCAAAGATTTATGAGGAGTGTAAAGTTGTGTTCATCTTTGATGGTCTGGATGAAAACAGAATGACACTGATGTTTTCAGATGCTCAGAAAATTTCTGATGTGACTGAGACTTCATCAGTGGGTGTGTTGATGTCAAAGCTCATGAAAGGAGAGCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCGGCCAATCAGATCCCCTCCGAATACATCAACCGTCTGACAGAGATTCAGGGATTCAATGAGTCTCAGAAGGAGGAATATTTCAGGAAGAGAATCCGTGACGAGCATCAAGCCAGCAGAATCATCTCACACATCAGAAGAGCAAGAAGCCTCCACATCATGTGCCACATACCCGTCTTCTGCTGGATCTCATCCACTCTCCTGAAAGAAGATCTGAGTGCAGAAATCCCTCAAACTCTGACTAAAATGTACATCCACTTCCTGGTGATTCAGATCAACATGAGGAATCTGAAGTATGAAGAGAGAAATCCAAAAAAACTCCTGCAGTCCAACAGAGAAGTGATTGTGAAACTTGCTGAAGTGGCTTTCAAACAGCTGATGAAGGGCAATGTGATGTTCTATGAGGAGGACCTGAGAGAGAGCGGCATAGACGTCACTGACGCCTCAGTGTATTCTTGGATTTGCACTGAGATCTTTAAGGAGGAATCTGTAATTCATCAGAGGAAAGTCTACAGCTTCATTCATCTGAGCGTCCAGGAGTTTCTCGCTGCTTTCTATGTGTTTTACTCGCATGTGGTCAACAACAAGGAACCACTGTATGAATTCAGATTTTACAGATCTGATAATGTCTCTCTATATGATCTACTAACATCAGCAGTAAATAAAGCCCTTGAGAGTAAGAATGGGCACCTGGATCTGTTCCTGCGATTCCTGATGGGTGTCTCACTGGACTCCAATCAGAGACTCTTACAGGATCTACTGACAGTCACAGAGAAAAGCTCAGAGAACATCAGGAGAACCACACAGTACATTAAAAAGAAGATCAAAGATCCATATAATATTTATCATCTCTCAGCTGGTCAATCTATCAGTCTCTTCCTCTGTCTAATGGAAATGAAAGATCAGTCTCTGTCCAAAGAGATTCAGGTGTTTGTGAAATCAGACAAACACTCAGAGAAGAAACTCTCTCCTGCTCACTGCTCAACAATCTCCTACATGCTTCAGATGTCAGAGGAGGTGCTGGATGAGCTGAATGCCATGAAATACAACACATCAGATGAGGGTAGAAGAAGACTGATACCAGCTGTGGTCAACTGCAGAAAAGCTCTTCTTTCTGGCTGTAATCTCACTGGTCAGTGTTGTGAGAGTTTGTCATCAGCACTACAATCCTCAAACTGCATCCTGAGAGAGCTGGACCTGAGTAACAGCGACCTGCAGGATTCAGCAGTGAAGCTTCTTTCTGATGGACTGAAGAGTCCAAACTGTCAGCTGCAGATACTGAGTCTTACTCACTGTAATCTCACTTTTCATTGCTGTGAGAGTTTGTCATCAGCTCTTCAATCCTCAAACTGTGTTCTGAGAGAGCTGGATCTGAGTAACAATGACCTGCAGGATTCAGGAGTGAAGCTGCTCTCAGATGGACTGAATAGTCCAAACTGTCAGCTGCAGACACTGAGGTTGTCTGGCTGTATGGTGACAGAGGAAGGCTGTGGTTTTGTGTCTTCAGCTCTGAGTTCAAACCCCTCACAACTGAGAGAGTTGAATCTTAGCTACAATCACCCAGGAGATTCAGGAGTCAAACTGCTCTTGGACAAACTGAAGGATCCAAACTGCTCACTGCAGATACTCAAGTGTGTCAAACACTAATACTGACATACTGAACGTGTGTGCATGAAGCATATCTATATTAATGTGTGTTTGTGTGTTTATAGTGTGGTTAATGGAGGAGAGATCATGATGACAGGAGGACTACGAAAGTGTAGGTCTACAAACACTCTCTCTCACACAGACACACACTCATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCACACGCACATACACACGCACACACAAACATGTTGTGTTTACATGTTTTATGGGGACATTCCATAGACAATGATTTTTATACTGTTAAACTGTATATTCTATCCCCTACACTAACCCTAAACCTACCCATCACAGAAAACTTTCTGCATTTTAACATTTTCAAAAAACATCACTTAATATGATTTATAAGCTGTTTTCCTCATGGAGACCAAAATAGGTCCCCACAAGGTCAAGGATTTTGGAAATTGCCATCTTTGTGGGGAAATTTTTCCCCATAAGATACCAGGACCACACACACACACACACACCAGGGGTGCATCTCATTTCTTTTTTGTGCAACCTCATTTTCTTTTTCTCGCTTCTTTTTTTTTTTGCGTCTTATCTCCACCCCCTTAGGATGTGAGGGAAGGATACACCTGTGTATCCTCGCTCACGACTCCTCAGGAAGCTTCCTCACCTCGTTCCTTGCCTCCTCATGGTGCAATTAGAGAATTCTAATGATTCAAAATGACTGAGTTCAATCAGTTTCCATGTCACGGGCTTGGAGGACAGAGGAATGAGGAAATAAGGAAGCATCAATTTGAGTATTAAGAAGCACCCCAGGGCTCCAGACTGACCAAATGGTCGCATTTTCCTACTGTTTTTTTTTTTTGCCAGTGTGACTAAATTTTGTTAGAGGTTGCATTAGTGCCACCACCACATTGGCCAACTGATAAGATATCTGTTGCATATGAGAAACATCAAATGGCAAATGAAAGCGCAATGAATCCGCGCTATTCGTTTAAGCTGCGCAGCGTGGACTGTTTATCAGCTCGGACCAGACAGTGACATAGACAGTGAGGCGTGAGCTCAAAATAGGTTTACTCGCAGGCAGTAGAAGTGGGCGATACTGCAAAGTTAGGTATCGATCTGATTCCAAATAAA

Function

NR:

description
hypothetical protein cypCar_00017719

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000135_00578080_00588322.mRNA True 4137 mRNA 0.43 8 576969 588543

Neighbor

gene id symbol gene type direction distance location
CI01000135_00524340_00537589 NA coding downstream 38254 524149 ~ 538715 (-)
CI01000135_00501028_00501977 NA coding downstream 73821 501028 ~ 503148 (-)
CI01000135_00433702_00445785 BUB1 coding downstream 131184 433521 ~ 445785 (-)
CI01000135_00338395_00339531 HTR1E coding downstream 237438 338271 ~ 339531 (-)
CI01000135_00316936_00333617 ZNF292 coding downstream 243000 316808 ~ 333969 (-)
CI01000135_00609374_00620722 RARS2 coding upstream 20804 609347 ~ 620722 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding upstream 34930 623473 ~ 631470 (-)
CI01000135_00679808_00684801 NA coding upstream 91027 679570 ~ 684801 (-)
CI01000135_00696281_00705815 NA coding upstream 107738 696281 ~ 706500 (-)
CI01000135_00707778_00716012 NA coding upstream 118358 706901 ~ 716012 (-)
G347136 NA non-coding downstream 62410 514343 ~ 514559 (-)
G347055 NA non-coding downstream 354410 222176 ~ 222559 (-)
CI01000135_00215508_00237582 NA non-coding downstream 360785 215469 ~ 237856 (-)
G346991 NA non-coding downstream 381613 184536 ~ 195356 (-)
G347161 NA non-coding upstream 89002 677545 ~ 698370 (-)
G347162 NA non-coding upstream 96815 685358 ~ 686170 (-)
G347193 NA non-coding upstream 128261 716804 ~ 717158 (-)
G347194 NA non-coding upstream 135664 724207 ~ 724481 (-)
CI01000135_00791752_00800033 NA non-coding upstream 177043 790724 ~ 800871 (-)
G347001 NA other downstream 80558 198316 ~ 496411 (-)
G347279 NA other upstream 558460 1147003 ~ 1216826 (-)
G347296 NA other upstream 743821 1332364 ~ 1366129 (-)

Expression


Co-expression Network