G347001


Basic Information

Item Value
gene id G347001
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 198316 ~ 496411 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU395013
ATAAACAAAAATGGTACCCTCCCCCTACATTCCCTTAAATCAAAAAGAATATAAGATAGGCTACTAACAAACATAAGTAACATAAAACATAAAAATAATCACAAGATGCTAAGCAACTTAAGTTCTCTTTCTGTTAAAGAGCACCACAAAATCCTGAGTTCACTTACTCAGAAATAGATCAACACAATCAAAAAAAACAAATCTGGGCAACAGGAGGAAGTATTTGCCCTGGCGGAAGGAAGTCTCTCTCTCTTCTCCACAGATTCACCACGTCTTATATTTCTACTCCTTCCCATCCTGAAGAGTCCAAACTGTCAGCTGCAGATACTGAGTCTTACTCACTGTAATATCACTAGTCAGTGTTGTGAGAGATTCTCATCAGTTCTACAATCTTCAAACTGTGTCCTGAGAGAGCTGGACCTGAGTAACAATGACCTACAGGATTCCGGAATGAAGCTTCTTTCTGATGGACTGAAGAGTCCAAACTGTCAGCTGCAGATACTGAGGTTGTCTGGCTGTATGGTGACAGAGGAAGGCTGTGGTTTTGTGTCTTCAGCTCTGAGTTCAAACCCCTCACACCTGAGAGAGCTGGATCTGAGCTACAATCACCCAGGAGATTCAGGAGTCAAGCTGATGGACAAACTGAAGGATCCAAACTGCTCACTGCAGATACTCAATGTGGATCATGGAGGAGAGATCAGGATCACAGCAGGACTACGAAAGTGGGCCTGTGATCTCACACTGGATCCAATCACAGCACACACTTGTCTCATTCTGTATGAGGAAAACAGGAAGGTGACACTTGTGAAAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU395013 True 812 TUCP 0.43 5 198316 496411

Neighbor

gene id symbol gene type direction distance location
CI01000135_00164301_00167634 NA coding downstream 30682 162430 ~ 167634 (-)
CI01000135_00158065_00158568 YPEL5, BRAFLDRAFT_262914, YPELB coding downstream 39748 157415 ~ 158568 (-)
CI01000135_00501028_00501977 NA coding upstream 4617 501028 ~ 503148 (-)
CI01000135_00524340_00537589 NA coding upstream 27738 524149 ~ 538715 (-)
CI01000135_00578080_00588322 NA coding upstream 80558 576969 ~ 588543 (-)
CI01000135_00609374_00620722 RARS2 coding upstream 112936 609347 ~ 620722 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding upstream 127062 623473 ~ 631470 (-)
G346991 NA non-coding downstream 2960 184536 ~ 195356 (-)
G346999 NA non-coding downstream 17229 174749 ~ 181087 (-)
G347022 NA non-coding downstream 102869 95235 ~ 95447 (-)
G347007 NA non-coding downstream 114317 83697 ~ 83999 (-)
G347014 NA non-coding downstream 119386 78626 ~ 78930 (-)
G347136 NA non-coding upstream 17932 514343 ~ 514559 (-)
G347161 NA non-coding upstream 181134 677545 ~ 698370 (-)
G347162 NA non-coding upstream 188947 685358 ~ 686170 (-)
G347193 NA non-coding upstream 220393 716804 ~ 717158 (-)
CI01000135_00791752_00800033 NA other upstream 269175 790724 ~ 800871 (-)
G347279 NA other upstream 650592 1147003 ~ 1216826 (-)
G347296 NA other upstream 835953 1332364 ~ 1366129 (-)

Expression


Co-expression Network