CI01000135_00501028_00501977


Basic Information

Item Value
gene id CI01000135_00501028_00501977
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 501028 ~ 503148 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000135_00501028_00501977.mRNA
AGCAGGTAGAACTAAAGGTAGAGCCCAGCTGTGTGTCTATGAAGAGTGACAGATCATTGCCTCTTCCTCCTGAGTTCAGTGATGAAACAGTGACCTCTGACCCCACTTCAAATATATGGACAAAAGTTTAGTGAGGGGAAAATTAACTTTAACTTTTAAACTGAAACTGAAATGTAAAACATTAATTATACAGACAATACAAGATTGACATCTGTATTGATTTACTATATAATTTAAATTTGAATTGTATTTATACATTTAAATTATTTTACATATTTTTTTAACCTGTTTTTATTTTGTCATTTTTGTTGTTTCAGCAATGTGGATAGAGATGATCAAACTGGAGACCTGCAACAGGATTCTTCTCAACCAATGAATGATGAACTACAGAGAGTCAAAGACCGACACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCAATGAATGATGAACTACAGAGAGTCAAAGACCGACACAAAACCAGCATGAAGAACAAGTATGAGAGATTATTTGAGGGACTGAAACTCCAAGAGAATAAAACCCTCCTGAACAGGATCTACACACAGCTCTACATCATAGAGGGAGAGAGTGAAGGAGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAAACAGCCAGAACACAACACTCACAAGACACTCCAATCTACTGCAATGACATCTTTAAAGCCTCACCTGAACCAGGATGTGAGGAGAAACACCAGATCAAGACTGTTCTTACTAAAGGCATCGCTGGAATCGGAAAAACCGTCTCTGTGCAGAAGTTCATTCTGGACTGGGCCGAGGGAAAAGCCAATCAGGATGTAGATTTCATGTTTGTGCTTCCATTTCGAGAGCTGAACTTGATCAGAGATGATCAGTACAGTCTTCACAGACTTCTGCTGGACTTTCATTCTGAACTTCAAGATCTGGACTCAAAGATTTATGAGGAGTGTAAAGTTGTGTTCATCTTTGATGGTCTGGATGAAAGCAGAATGACACTGATGTTTTCAAACGATGTGAAAGTTTCTGATGTGACTGAGACTTCATCAGTGGGTGTGTTGATGTCAAAGCTCATGAAAGGAGAGCTGCTTCCCTCTGCTCTCATCTGGATCACCTCCAGACCAGCAGCGGCCAATCAGATCCCCTCCGAATACATCAACCGTCTGACAGAGATTCAGGGATTCAATGAGCCTCAGAAGGAGGAATATTTCAGGAAGAGAATCAGTGATGAGCATCAAGCCAGCAGAATCATCTCACACATCAGAAGAGCAAGAAGCCTCCACATCATGTGCCACATACCCGTCTTCTGCTGGATCTCATCCACTGTGCTTCAGAAGCTCCTGAAAGAAGAACTGAGTGCAGAAATCCCTCAAACTCTGACTGAAAT

Function

NR:

description
novel NACHT domain containing gene, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000135_00501028_00501977.mRNA True 2121 mRNA 0.27 1 501028 503148

Neighbor

gene id symbol gene type direction distance location
CI01000135_00433702_00445785 BUB1 coding downstream 55243 433521 ~ 445785 (-)
CI01000135_00338395_00339531 HTR1E coding downstream 161497 338271 ~ 339531 (-)
CI01000135_00316936_00333617 ZNF292 coding downstream 167059 316808 ~ 333969 (-)
CI01000135_00313634_00313792 NA coding downstream 187236 313307 ~ 313792 (-)
CI01000135_00301214_00309259 NA coding downstream 191610 301214 ~ 309418 (-)
CI01000135_00524340_00537589 NA coding upstream 21001 524149 ~ 538715 (-)
CI01000135_00578080_00588322 NA coding upstream 73821 576969 ~ 588543 (-)
CI01000135_00609374_00620722 RARS2 coding upstream 106199 609347 ~ 620722 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding upstream 120325 623473 ~ 631470 (-)
CI01000135_00679808_00684801 NA coding upstream 176422 679570 ~ 684801 (-)
G347055 NA non-coding downstream 278469 222176 ~ 222559 (-)
CI01000135_00215508_00237582 NA non-coding downstream 284844 215469 ~ 237856 (-)
G346991 NA non-coding downstream 305672 184536 ~ 195356 (-)
G346999 NA non-coding downstream 319941 174749 ~ 181087 (-)
G347022 NA non-coding downstream 405581 95235 ~ 95447 (-)
G347136 NA non-coding upstream 11195 514343 ~ 514559 (-)
G347161 NA non-coding upstream 174397 677545 ~ 698370 (-)
G347162 NA non-coding upstream 182210 685358 ~ 686170 (-)
G347193 NA non-coding upstream 213656 716804 ~ 717158 (-)
G347001 NA other downstream 4617 198316 ~ 496411 (-)
CI01000135_00791752_00800033 NA other upstream 262438 790724 ~ 800871 (-)
G347279 NA other upstream 643855 1147003 ~ 1216826 (-)
G347296 NA other upstream 829216 1332364 ~ 1366129 (-)

Expression


Co-expression Network