CI01000135_00313634_00313792


Basic Information

Item Value
gene id CI01000135_00313634_00313792
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 313307 ~ 313792 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000135_00313634_00313792.mRNA
AATAAAGCGGTCATGGCCATGGGTCTGCTGAGCCTCACGCTGTGTGTGGGGTACCTGGGATATCTGCACGCCATCAGAGAGAGCGACCAGCAGCTGTACGAGGCCGTGGACAGTGACGGAGAGAGATACATGAGGAAGAGGACCTCCAGATGGGACTGAGTTCATCATCATCATCATCATCATCATCACTGCACCTCACATAAATCACCCAGGAATAATTCATAGACATGAACTGAACATGTCAGTGTAGTGGAAGTCTTGCTCTGTGTGTGTGTGTGTGTGTGTAATGGTTTTAAACATATGTGATATCATTTAATTAGACTCATATTCCGCTTTATATTGCACAGTATAGTAATCTATCCATAATTACCAGACCAACACACAGTTACTGCATTTAGATTCTTGTTTGGGCAGGGCTGAAGCATATAGCTGAGTTAATATGCCACAATATGGGTTATTTTGGGAAAATTACATTCAGCTAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000135_00313634_00313792.mRNA True 486 mRNA 0.43 1 313307 313792

Neighbor

gene id symbol gene type direction distance location
CI01000135_00301214_00309259 NA coding downstream 3889 301214 ~ 309418 (-)
CI01000135_00294780_00299856 NA coding downstream 13451 294124 ~ 299856 (-)
CI01000135_00288811_00291954 RPF2 coding downstream 21065 288811 ~ 292242 (-)
CI01000135_00255418_00262368 NA coding downstream 50939 255274 ~ 262368 (-)
CI01000135_00215508_00237582 NA coding downstream 75451 215469 ~ 237856 (-)
CI01000135_00316936_00333617 ZNF292 coding upstream 3016 316808 ~ 333969 (-)
CI01000135_00338395_00339531 HTR1E coding upstream 24479 338271 ~ 339531 (-)
CI01000135_00433702_00445785 BUB1 coding upstream 119729 433521 ~ 445785 (-)
CI01000135_00501028_00501977 NA coding upstream 187236 501028 ~ 503148 (-)
CI01000135_00524340_00537589 NA coding upstream 210357 524149 ~ 538715 (-)
G347055 NA non-coding downstream 90748 222176 ~ 222559 (-)
G346991 NA non-coding downstream 117951 184536 ~ 195356 (-)
G346999 NA non-coding downstream 132220 174749 ~ 181087 (-)
G347022 NA non-coding downstream 217860 95235 ~ 95447 (-)
G347136 NA non-coding upstream 200551 514343 ~ 514559 (-)
G347161 NA non-coding upstream 363753 677545 ~ 698370 (-)
G347162 NA non-coding upstream 371566 685358 ~ 686170 (-)
G347193 NA non-coding upstream 403012 716804 ~ 717158 (-)
CI01000135_00791752_00800033 NA other upstream 451794 790724 ~ 800871 (-)
G347279 NA other upstream 833211 1147003 ~ 1216826 (-)
G347296 NA other upstream 1018572 1332364 ~ 1366129 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G147809 NA non-coding NC_053125.1 CM020922.1 30998879 ~ 30999083 (+)
tiger barb (Puntius tetrazona) G135222 NA non-coding NC_056718.1 CM032087.1 1025472 ~ 1026881 (-)