G135222


Basic Information

Item Value
gene id G135222
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 1025472 ~ 1026881 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU199789
acacaaataaaaacttttattttgggtacaattaattgtttgacagcgctGGATTAAACACATTGTTCCCAActcaaacagaaatatttacagaaattaaattctttttaaactttatttgtcCTCTCCGCTAGTGCGCAACTACAGAGATTCAAACGTAGACGTTTTACTGAACCCAAAGCACAGGTCCGTGTTATAATACACATGTCTGGAGTGAATGAAGAGTGAGTGAGCGCAGGCTGGGgagctcttcctcctcctcctcctcctcagtcCCACTGGgagctcctcctcttcctcctcctcagtcCCAGCGGGAGCTCTTCCTCCTCATGCGTCTCTCTCCCTGGCCGTCCACCGCCTCGTACAGCTGCTGCCGGTCGTCCCGGAGCGCGTGCAGGTAGCCCAGGTACCCCACACACAGCGTGAGGCTCAGCAGACCCACGGCCATCACCGGCTTGTTCTGCACATCAACACACGTGTGTGTCAGAGCACAAGCTAATAAACCATCACCAGCACTTatagttaacatgaacaaaacGTCAACAATGAAACCTTTATAGGACTATAATATCAGCAGCAgcaatagaaaaaagaaaactctaACTGTATTGTTATGTAAGAAATCATTAAGATAGTGAGTAAAGATCATGCTCCATAAGACATTTAGCACACTTCCTGCTCTAAATGTATCGaaactataacaattttatatatttttttaatatcatgcaTGTCttagaacttaatttggacaattttaaaagagattttccctcagatttcagattttgaaTCTATCccacacataaaaacaatggAAAGCCTCTTTACTCGGCTTTCATCTCAATTTAAAAGAATCGACCCTTGTGACCGAAGTCTTAGACGTTTACTACATTAAGCGCGTCACTTccgtttatgaaaaataaatgatcatgtGATGGATCTACACATATTAAATTGTTATCGGACTAATTAAACTAGCGAGAAGACAGAAGGGCTCGCTCTCAATGTGTTTATATTGAACTTTTGACGCGACGCGGCGGTCTGACGCATGCGCAGAGAGATCAGCTCGTGAGCGTAAGGCccgaggagaagaagaagaagcgtGAGAAGAGCACTTGCGGGTCTGATGAAGAGCTCGGGGTTGAGCGCGCGGAACAGCGAGGTGGTCGTGACCCCGCGGAGCCCGGGGCCCCTGGAGGCCGAGGCCGAGTCCGCCGCGCCGCCCGCTGCCCCGCTCTCCTGCGCCGGACGCATCGCTCTCCTCCGCGGTCACGAACACACGACGCGCGCGGGGCTCCTGAGGGTCCTCCTGACTCTGACCTACAGGAAAACACACCCGAGTCGCGGCgcacttcttc

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU199789 True 1364 lncRNA 0.48 2 1025472 1026881

Neighbor

gene id symbol gene type direction distance location
gjb7 gjb7,cx28.8,LOC107563147,LOC107569825,LOC107709909,LOC107576048 coding downstream 198 1021630 ~ 1025274 (-)
med23 med23 coding downstream 120381 867719 ~ 905091 (-)
arhgap18 arhgap18,LOC107660538,LOC107740524,LOC107653144,LOC107560483 coding downstream 386916 613675 ~ 638556 (-)
si:dkey-126h10.1 si:dkey-126h10.1,LOC107757668,LOC107653135 coding downstream 566606 451877 ~ 458866 (-)
ptprk LOC107653136,LOC106607755,LOC106571353 coding downstream 596575 295938 ~ 428897 (-)
LOC122324736 syncrip,LOC107709954,LOC107563155,LOC107675091 coding upstream 21969 1048850 ~ 1058048 (-)
slc35a1 slc35a1,LOC107709883,LOC107675061 coding upstream 54194 1081075 ~ 1087580 (-)
LOC122325202 btbd9,LOC107688314 coding upstream 113769 1140650 ~ 1146850 (-)
LOC122324370 LOC107688317,LOC107708306,LOC107697512,LOC107572741 coding upstream 127183 1154064 ~ 1160381 (-)
zgc:112001 NA coding upstream 135795 1162676 ~ 1164732 (-)
G135234 NA non-coding downstream 100963 924266 ~ 924509 (-)
G135232 NA non-coding downstream 103594 921445 ~ 921878 (-)
G135218 NA non-coding downstream 107226 917428 ~ 918246 (-)
G135214 NA non-coding downstream 161590 863647 ~ 863882 (-)
G135202 NA non-coding downstream 260238 764744 ~ 765234 (-)
G135277 NA non-coding upstream 79896 1106777 ~ 1107104 (-)
G135225 slc16a10,LOC107563131 non-coding upstream 100411 1127292 ~ 1130076 (-)
G135297 NA non-coding upstream 211079 1237960 ~ 1238160 (-)
G135323 NA non-coding upstream 260211 1287092 ~ 1287309 (-)
G135339 NA non-coding upstream 386922 1413803 ~ 1422222 (-)
G135237 NA other downstream 60077 938165 ~ 965395 (-)
epb41l2 epb41l2,LOC107717037,LOC107560489,LOC107697498,LOC107653142,LOC100380760,LOC107711607 other downstream 202962 753567 ~ 822510 (-)
tmem244 tmem244 other downstream 375115 643571 ~ 650357 (-)
G135276 NA other upstream 75824 1102705 ~ 1103113 (-)
G135275 NA other upstream 76425 1103306 ~ 1105818 (-)
G135279 NA other upstream 83544 1110425 ~ 1110861 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other upstream 519606 1546487 ~ 1571699 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other upstream 628215 1655096 ~ 1660536 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000135_00313634_00313792 NA coding CI01000135 null 313307 ~ 313792 (-)