CI01000135_00881762_00883731


Basic Information

Item Value
gene id CI01000135_00881762_00883731
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 880974 ~ 883731 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000135_00881762_00883731.mRNA
GTTAACCTCATTCATCTCATCTGGGTTTTCATGACAGAAGACCAGAACTACCCAATAATGAATCCAGCAGGCAAAAAGATGGCTTCATTTCACTCAGCTGAACAGCTGCTCTTACTCTACCATGATAGCTGCCCATTGGCAGAGTATATACTGAAATTCTGTGGACTAAGGCCACTTAACACACCCACAACAACTCCAGCCCCCTGGTCCTGTATCACCGGCACCTCCCTCTCAACCGGCATTCTAGAGGACATCCTTTCAGCAGGCCCTCCAGAGTCTCTCCACTCCACATGCTCTCAACTCTGCCAGCTACCCTATGAGACTGTTGCTTTTAGTTCCTGGGGTAGTCCATGCTGCTGTTCTGCAGTGGAGTCATGCCTTCAGGCTGATATGACATCCTGGTGTGAGGAGATTGTTGGCAGCCATCCGTGTTTTTGGTGGCCAGCCATGGCAAAGGACATTCATTGGTTTCTGGGCGCCTGTTCAGTCTGCACTCAAAATAAATTGTCCAATCTGCCATCCGCTGACCAACATCCAGATCAAATGGGCACACTAGGATCTCGAGCAGATGCTCCGATGCCTGGCCTCTCACAACCCCTCTACCAGAAGCCAGCAGCTGATGATGCTAAAGCCGAGGATGCACCAAGAGAGCACCTTACTGTGGTGACCAGGTACCATTTTTCCACCTGGGGTTTTTTCTCCCTGCGTATAGTCGGCCTTGCCAGTCTTGTTATTCTCCGCTCTCTGTCTAATCTCGTATATGGAGTCCTCTCCTGCCAGTGCACTGCCCATCCCTGTTCTGAACTTTGGCATGGTACCTGGCTTCTATTCTCGGATATCCTTTTGGAGTTTATGCTTGGTGTGGACAACCTTCGGTCTCCTTTGCACCTGCTTACCTTTGGACTTAATCTCACAGTGACAAAGTCTGCCAGGTCTTCGACTGTCTATTTATCTCTGCTCTGTTGGTTTGGGACTCTATGGCCTGGCTCTCTGATATTAAGTTTCATTAATAAAGTGCATATTTAGAGTCAAGAGACTGACAACAGTCCAGACTATAACAAACACACGTTTAATTAAGGAAACCTTCTACATTCGTTCAATTCCTGCATTTGAACTATCAAAACCCAATGAGGTAATAGTCACGTGCCACAAGTAAACAAGACATTAATTAACACTTTAATTAACACTATTTATTGATACTAGATGTTCACAGGGAAATAATCTGCTGTATAATAACATTTAATTAATAACATTTCAAATACGACTTCTATTAAACAGGTTGACTCTTTATTAGTTGCTGATGCGTTAATTATTATGAAGGGGATTAATGAATGGCTTAGATCTTCACAAGTCATGTGTTAAATGAAAATTATCTGTGCATTACTTAAGCATGAATTAAAGTATATAAAAGTATATTAGTTACCAGAAATCTTACCAACCTCAAACTTCTGAATGGTAGCCTAATATGCATACTGTATTCTACATATTATAGTTTGATTAATCAAAATGAATTATGTAATTATTTGCTTAGTTCTGTTGTGTGTCTATTGAATTTCTTTGAATTGTCATTCAGTAAATTTTCTTGTCATTCTCACGTCTCTCAAAGCGGAAAGTGAGACAGCTCTGAAATCTGAATTTTCGAGCCAGGTGTAAATGCATAAAACCTGGAGTGTGATACGAGGTTACTGATGATGTGAAACAACTGTGCCTCAGACACAAAGGACCCTGCTAGATCACCCTCATTAAAATCATTGCTATTGTTATTAATAATGGAGCGTTAGCATGAATGCACAATCATACTGTATGCAAATAAA

Function

NR:

description
retrotransposable element Tf2-like protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000135_00881762_00883731.mRNA True 1814 mRNA 0.42 5 880974 883731

Neighbor

gene id symbol gene type direction distance location
CI01000135_00791752_00800033 NA coding downstream 80103 790724 ~ 800871 (-)
CI01000135_00707778_00716012 NA coding downstream 164962 706901 ~ 716012 (-)
CI01000135_00696281_00705815 NA coding downstream 174474 696281 ~ 706500 (-)
CI01000135_00679808_00684801 NA coding downstream 196173 679570 ~ 684801 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding downstream 249504 623473 ~ 631470 (-)
CI01000135_00909940_00911418 TMEM200A coding upstream 26027 909758 ~ 911564 (-)
CI01000135_00935305_00937803 L3MBTL3 coding upstream 50743 934474 ~ 939483 (-)
CI01000135_00949536_00968521 NA coding upstream 65805 949536 ~ 968521 (-)
CI01000135_01036648_01040176 LAMA2 coding upstream 152782 1036513 ~ 1040176 (-)
CI01000135_01057682_01067405 NA coding upstream 173695 1057426 ~ 1067405 (-)
G347219 NA non-coding downstream 1029 879722 ~ 879945 (-)
G347198 NA non-coding downstream 3058 805279 ~ 877916 (-)
G347172 NA non-coding downstream 34576 825544 ~ 846398 (-)
G347194 NA non-coding downstream 156493 724207 ~ 724481 (-)
G347231 NA non-coding upstream 7770 891501 ~ 891784 (-)
G347235 NA non-coding upstream 10677 894408 ~ 894615 (-)
G347242 NA non-coding upstream 17111 900842 ~ 901091 (-)
G347244 NA non-coding upstream 39195 922926 ~ 923309 (-)
G347247 NA non-coding upstream 49304 933035 ~ 933391 (-)
G347001 NA other downstream 384563 198316 ~ 496411 (-)
G347279 NA other upstream 263272 1147003 ~ 1216826 (-)
G347296 NA other upstream 448633 1332364 ~ 1366129 (-)

Expression


Co-expression Network