G347172


Basic Information

Item Value
gene id G347172
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000135
NCBI id null
chromosome length 1546597
location 825544 ~ 846398 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU395215
TGGAAGTACGGCGCGGGCCGGTCGATGAGGGAACTGGCCTGTCGCGTCTGCGCCTGCGTCCTCCCGCTGTAGCGGAACTTGGAGCCCAGAGTCAGGAACTTGGCCTTGGTGGGCTGTTCGGGAGACATCAGCCTGAAGAAGGTGTGGTGTTCAACACAGACTTTCCAAACTCTTTTGGCAGCACGATGGTTGGGCAGCTTGAAGCCGACGGTACTCTCAAACTGCTCAGCCTCTCCTGGCCTGATCTTGATGTAGAAGTTACTGCGTTTGTAGGAGATCTTGAGGATTTTGGGCCAAGCAAAGCGGTTTATCCGCAGACGATCCTTATAGATTAACAAACCGTTTGCACACACTCCCAACATGATATCCACTCCCTCAGAGTCCTTGGCATGATGCAGGTCTACGCCGTACATGGAGAGCTTCTTCGCATTTTCCAAAAACTGGGCATCTGCTTGGGCTGGAGTCATTCCCCTGTGGGACTTGTGTAGCTCCACCACCTTGTCCTCCAGCTCCTTGGTCTGGTTTGGGGCGAACTGGAAGTCGGAGATGTAGTCCAGACGATGCTCTTCCGGGTCATAGTCGCCCAGCTCAGCCTGCAGGGCGTATGAGCCCAGCAGCGCGTGTGTGACGAACGAACACGGCAGCCGTCCCGATGCAATATCCTGCCTGAGCTGAAGGCATAGCAGATACCTGGTTATGTCCTCCGTCAGCTGGGACGGGTCAGGAGGGTAAAACTTCACACTGAACGCAAACTGCCACTGAGAGTTGCGGATCTGCCGCTTGATTTCCTTGGTCGGGTCCAGCCAGCACCTCTGCTCAGCGTTGTCTTTAAAGCTCAGGCCGAAATAATCCTTCTCCAACAGATTCAGGTGCTCGCAGACTTCAAAAAACAGGTACTGGCCTTTCGCCCGTTTCTCCACCTCGCAGGAGAACTGGCTGCCGTCCAGTAAGGTCACGTGACACACCACCATCTTCATCTTCTTGTTGAGTTTGAGTGGTGACAGCACACTCTTCTCCTGCTCAACCACTTGCTCTTCCTCTTTCTTCTCCTCCTCTTTCTCCTTCACGCCCTCCTTCGCCTCCGATTCGGCCTCTTTGTCCTCCCTCGCAGGCTGTGTGTCAGCACTGCCGATTGACTTCTCCTCCTCTTTATCTTTCTCCTCCACCTGCACTTCCTCTGGCCTGCTCTCCTCCTCCTTCACCTCTTTCACCTCCTTTACCTCCTTCACTTCCTTCACTTCCTTCACCTCCTTCACCTCCTCCACCTCCTCCACCTCCTCAGTTTTCTCTGTACTCGGGGCCGCTGCTCCTCCTCCGTCCGTCTGGTCTTTCGGCTCACTCTTCTGCTCCTCCTCCTCCTCCTTCAGGCTCTCGCTCTTGGGCTGTGCTGGGCTCTCAGGAGGTTTCTCTTGGCTTAGTGATTTCTGTCGTTTAAGCCATGGAGGCAGGAAGCGAGAGATGCCCTTCTCTTTCTTCTGGCTGCCGGCAGCAGGAGGGCTGCTGGGCTCAGGAGATGCGGACGCTTCCGGCTGGCTCTCGGGCTCAGTGCTCGGAC
>TU395217
CCTCAATAGAGCATCGAACCGCAGCATTCAAGTATGAATCAGATGCGATGCCACGTGAGCATAACCATGATACAGATGATAATCAAAAACAAACATATGATATGATTTGTTTGTTGTTGCCGGCGTATTCGAGGAAAGTGGGGCCTGTATCCACTTTTGTGTCCTTAAACATTCGTTTTTTGGAGTCGACAGCTTATAAAAACTTAGTTCTGGGTTTTTTAGCTTGTTTGCTGTACACCTTGTCACATAGCAGCTTTTAGACATTGTTCTGTTTTCTGTAATAAGTCAGAAATGACAAGGAGGCAGCCTCACGCAATACAAAGTCAGTGCAGACTGTTGGATTGTTTTCCCCCCGGTGGGCGTGGTTTTCAGATTATGACGCGTGTCGCTCTGTCTCTATGGAGCAGCAGCTCATTTGCATTTAAAGATACACACACAAAAACAGCATGTTTTTCCTTCTAATCAAAAACTGGCATTTACAACATGCTATAATAAATGATCTGTGAGGTATTTTGAGCTGAACCTTCAGACACATTTTAGGGACACCTTTTACTTCTTGTAAAAGGGGCATAATAGGTCCACTTTAAAGTTGCTCAACTTGAATTTGAGTGCTGCTGTCAGACCTGTGGGACTTGTGTAGCTCCACCACCTTGTCCTCCAGCTCCTTGGTCTGGTTTGGGGCGAACTGGAAGTCGGAGATGTAGTCCAGACGATGCTCTTCCGGGTCATAGTCGCCCAGCTCAGCCTGCAGGGCGTATGAGCCCAGCAGCGCGTGTGTGACGAACGAACACGGCAGCCGTCCCGATGCAATATCCTGCCTGAGCTGAAGGCATAGCAGATACCTGGTTATGTCCTCCGTCAGCTGGGACGGGTCAGGAGGGTAAAACTTCACACTGAACGCAAACTGCCACTGAGAGTTGCGGATCTGCCGCTTGATTTCCTTGGTCGGGTCCAGCCAGCACCTCTGCTCAGCGTTGTCTTTAAAGCTCAGGCCGAAATAATCCTTCTCCAACAGATTCAGGTGCTCGCAGACTTCAAAAAACAGGTACTGGCCTTTCGCCCGTTTCTCCACCTCGCAGGAGAACTGGCTGCCGTCCAGTAAGGTCACGTGACACACCACCATCTTCATCTTCTTGTTGAGTTTGAGTGGTGACAGCACACTCTTCTCCTGCTCAACCACTTGCTCTTCCTCTTTCTTCTCCTCCTCTTTCTCCTTCACGCCCTCCTTCGCCTCCGATTCGGCCTCTTTGTCCTCCCTCGCAGGCTGTGTGTCAGCACTGCCGATTGACTTCTCCTCCTCTTTATCTTTCTCCTCCACCTGCACTTCCTCTGGCCTGCTCTCCTCCTCCTTCACCTCTTTCACCTCCTTTACCTCCTTCACTTCCTTCACTTCCTTCACCTCCTTCACCTCCTCCACCTCCTCCACCTCCTCAGTTTTCTCTGTACTCGGGGCCGCTGCTCCTCCTCCGTCCGTCTGGTCTTTCGGCTCACTCTTCTGCTCCTCCTCCTCCTCCTTCAGGCTCTCGCTCTTGGGCTGTGCTGGGCTCTCAGGAGGTTTCTCTTGGCTTAGTGATTTCTGTCGTTTAAGCCATGGAGGCAGGAAGCGAGAGATGCCCTTCTCTTTCTTCTGGCTGCCGGCAGCAGGAGGGCTGCTGGGCTCAGGAGATGCGGACGCTTCCGGCTGGCTCTCGGGCTCAGTGCTCGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU395215 False 1555 lncRNA 0.56 10 825544 846398
TU395217 True 1707 lncRNA 0.51 6 825544 841043

Neighbor

gene id symbol gene type direction distance location
CI01000135_00791752_00800033 NA coding downstream 24673 790724 ~ 800871 (-)
CI01000135_00707778_00716012 NA coding downstream 109532 706901 ~ 716012 (-)
CI01000135_00696281_00705815 NA coding downstream 119044 696281 ~ 706500 (-)
CI01000135_00679808_00684801 NA coding downstream 140743 679570 ~ 684801 (-)
CI01000135_00623693_00630930 AKIRIN2, CF166 coding downstream 194074 623473 ~ 631470 (-)
CI01000135_00881762_00883731 NA coding upstream 34576 880974 ~ 883731 (-)
CI01000135_00909940_00911418 TMEM200A coding upstream 63360 909758 ~ 911564 (-)
CI01000135_00935305_00937803 L3MBTL3 coding upstream 88076 934474 ~ 939483 (-)
CI01000135_00949536_00968521 NA coding upstream 103138 949536 ~ 968521 (-)
CI01000135_01036648_01040176 LAMA2 coding upstream 190115 1036513 ~ 1040176 (-)
G347194 NA non-coding downstream 101063 724207 ~ 724481 (-)
G347193 NA non-coding downstream 108386 716804 ~ 717158 (-)
G347161 NA non-coding downstream 127174 677545 ~ 698370 (-)
G347162 NA non-coding downstream 139374 685358 ~ 686170 (-)
G347219 NA non-coding upstream 33324 879722 ~ 879945 (-)
G347231 NA non-coding upstream 45103 891501 ~ 891784 (-)
G347235 NA non-coding upstream 48010 894408 ~ 894615 (-)
G347242 NA non-coding upstream 54444 900842 ~ 901091 (-)
G347244 NA non-coding upstream 76528 922926 ~ 923309 (-)
G347001 NA other downstream 329133 198316 ~ 496411 (-)
G347279 NA other upstream 300605 1147003 ~ 1216826 (-)
G347296 NA other upstream 485966 1332364 ~ 1366129 (-)

Expression


Co-expression Network