RNA id: AMCG00003604


Basic Information

Item Value
RNA id AMCG00003604
length 9717
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00003604
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11461663 ~ 11482931 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACGAGGAGGCCGAGCGGGAGCACAGTCCACGGATCGGCAGCAGCGCGGCGATAGCGGCTCTCCGAGACCGGCTGCAGGAGCTGGCCGGCGGGCTGAAGGACAGCCGGGAGCCCGCCGTGCAGTCCACCTCCCAGTACTGCCAGGATTTCTGCCAGGTCGGAGCCGATGCCTCTTGCGCTGTCTGTGCATGCGAGCGGATCCAAAATAAACCCCCAGAAACGAGATGGTTATTATTAATCAGCCCGAGCGCTGAGGAGGGGGCAGCCGGAGCCACAGGGAGGGGGAGTGAAGAGATACGGGGCAGTGATGATAATAGCGACGTGAAACGGGCGCGGCGCTGGCGGCGGGTCGCCTCTCACGGGCTCTGGTCAGCCGGAGTTCACGTCACTCTAGTCGAATACGCTGGCCGATGGAAGATCTCAGAAGATCCTCTGCCTTTAGTGGAGGTGTACACGGTGGCAATACTAAACTACGCGCAAGCTCGCCGCTTCCTCACCtctgaatatgaaaatgtgtccCTTGTACTTGAAAGGCTAACGCTGAACTGTGTTGAGCTGCTACTTTCCCTGCCAGAAGAAATCCCAGATGCGTTGTGGCAGGTGTTTCAGTGTTCGGTGCAGACAGCACACAGCTTACAGTTGGAGAATGGGTGCTCTGAACTGCAGATGTTGTCGGCCATTGCGAAGGACACTGGCGTGTGGGCGAACAGTACACTACGATCCATTCTGTCCAAGGAAACGTCTGAAATGGAAAGAGTGCATGAGTTTCTCGAACAGGAAGGACCAGTGTTACTGGATATGAGGATAAAGCAGCTTATCAAAGCAAGCCACATAGAAAAGGCAGCGTTGCTGGCCAAAGTGTGCTCTGAACATCCAGAGTTCGGGGGGAAAAGCAATTTCAAACAGACCTACCTCGTCTGTCTGTGTACAGCTGCTCCACAGGAACAGTTGATGCTAGAGATTTCAGAAGTCGACTGTAAAGATGCACTGGAGATGATTTGCAACCTGGAGTCAGAAGGGGATGAGAGAGGTGCACTCTCTCTTTGCTCCGCATTTCTAACTCGGCAGTTGCTCCAAGGAGAAATGTATTGTGCCTGGGAACTCACGCTGTTTTGGAGTAAACTGCTGCACAGGCTTGAGGCATCCACCCAAGTGTTTCTTGACCACTGCCGGCGAATATCTCTGATGTCCAAGACGGTGTATCACATCTTCTTTCTAATTAAGGTCATCCAGTCGGAGGTTGAAGATGTGGGCCTGCCAGTTTGCATTGAATTGTGTGTTCGAGCGCTACGAATGGAGTCCAGTGACAATGCCAACATCAAAGCCACCATCTGCAAAACCATCTCCTGCTTGTTGCCCAATGACCTGGAAGTGAAGCGCGCCTGCCAGCTTACCGAATTCCTATTGGAGCCCACCGTCGATTCGTACTACGCTGTGGAGACGCTTTACAATGAACCTGACCAGAAATTTGAGGAGGAAAATCTTCCAGTACCCAATTCACTTCGCTGTGAGCTCTTACTGGTCTTCAAGACTCAATGGCCTTTCGACCCCGAATTCTGGGACTGGAAGACTCTGAAGCGGCATTGTTTAGCATTAATGGGAGAGGAGGCTTCCATTGTTTCATCAATCGATGAACTCAATGATAGTGAAGTTCTTGAGCAGCTTGAGGAGGAAGATGGCAGTAGAGGTCAGGAAGATTTCAAAGATCTGAATGATTGTTTCTTGGACACAACAAATGTGCTCAATGAGATTGTggatgaaaaacagaaaaagagggAAATCAAGAAACTGAGGGAGAAAGGGTTTATATCAGCTAGGTTTAGGAACTGGCAGGCCTACATGCAgtactgtgttttgtgtgatAAAGAATTTCTTGGACACAGGATTGTACGGCACGCCCAAAAGCATGTGAAAGATGGGGTTTACAGCTGTCCAATATGTGCTGAAAATTTTGACTCTAAAGAGCTATTTGTCCCACATGTAACTTCGCACGTGAAGCAGTCGTGCAAAGAAAGGCTAGCTGCTATGAAAACCAGTAGGAAGTTAGCTAATCCTACTAAAATGCCCTTCCCTGACTCTGCGCTTCATAAAGAGGGAGCCCACGAAAAGCAGGACTGCAAGCCCAAGAAGAAAAGCCGCCCATGTTCAAATGACTCTCCGGTCTCCTCACATGGTGACAGCCCTGAGGGCTCCAGACATAAACTCCCAAAGCCTGAGCTTGCTGTACACAGGGCAGAGTACGTGGAGGAATACACATGCCCTGTGACGAACTGTAGGAAAGGCTTCAAGTACTTCAAGAATTTGGTTGCCCATGTGAAGGCtcacaaaaacaatgaagaagCTAAACGGTTTCTTGAAATGCAAAGCAAGAAAGTGGTTTGTCAGTATTGCCGGCGACAGTTTGTCAGCGTCACCCACCTCAATGATCACTTACAAATGCACTGTGGCTCCAAGCCGTATATTTGCATACAGCTAAATTGTAGGTCCAGTTTTCTCAGTAACGCAGAGCTGCTGGTCCACAGGAAAGAGCACGTAGCCTTTAAGGCCAAATGCATGTTTCCGAACTGTGGCCGCATTTTCTATGAAGCCTACATGCTGTATGATCACGAAGCTCAGCATTACAACACGTTCACCTGCAAAGCTCCCAACTGTGGTAAAATATTTCATTCTCAATCTCAGCTTGATCTGCACCTGGAAGATCATGTTGTGAAGCAAGAACCTCCTGCCAACGAGGACCCAGATTTTATCAAGACGGAACAGCCAGATCCAAAGTCTCCATTACAGGACCCAAACCACACCGTTTCCCCAGATTCACACCCATCTAATTTGTTAGATTTCCTCCAGCATGAAACTGCAGAACCAAGTTCCTCTACATCACCAGATAAGACTATGCTTGCAGATCACAGTCGGCTACAAGTAGAAAATGCTAATCGTGACATGCAGGACGCAGCTCAAGATTCAATGCATGAATCAGAGCAGAAATTGGTAGTGGAGACTAATCGGATGGACACACAGAAGCATGAAGACACTCCAGCACCCCATTCTAGTGATCCTTTGTtagacatttcaatacaaaagcCATTAGCTGAACCCAATCAGACAGTCTTAGAGGAATTCACACAAACACTACTGCCCGAGCCAGATCACACATCATCCCAGAATCTGTCTCGTTTACAAGATCCGTATCGAACTATACTACATGACTCGCACATGTCTTCATTCCCTGATCCTCAACCAGCTTTGATTCCGGATATATCCCAGTTACCTAATctcaatcaaaatattttacaggatCAAATTCAAACTGAAGTATCCAATCCTAACCAGAATTTGTTGtgcaattcaaatcaaattttGTACCCAAATCAGGACTCTTTGCCTACTGAAATTCCAAGCTGGTTTCAGGGTGTGAATCACACTCCACATGTCAATCAAACTGCTTTGCAACATCCAGTACAATATAACTGTCCTTTAGGTTCCCACATAAAAGAAGAACCGGTTTCTGGTATTGACTGTATGGAAAATGTATCTAACAATTTTCAGCAAGCTCTGTCAGCTCAAGCCTGTGATGATGGGGGATTAGAAGTTAGTTCTGATGGCAGACAGGCAGGGTGTCCACCACTACCAGAGCTGCTTCTGAAAAGTGAAGCAGGTCAAATTAAACACAGCACACCTAGTGCAACCTCTTGTGATGTAAATCAGATCCCAAACCGCACACCCATTATGAAGGTTGAAAATccaaatgaaattcaaattcCCAGACCATCGCAAGTTGCCTCTGGCGTGGCTGTTCCAAACACTAATCCTGTACCACCTTCTGTAGTTGGTAGGGTAAATGCAGTTCCATCACAGTTGTATAAAGGCATTGCTGTTGTACCTGGAGGAGACACAACCGGTAACACAGAGGGCTTGGTGAAGGCTGTTCAGAGATATAACTGCTCCTTTGAGTCGTGCACTCGGACCTACAGTTCGACAAGAAGCGTCAGTAAGCACATGAAAGCAGTACACCCTGAGTATTATGCAGAGCTGAAACTGGCTCGCAAGAACAAAACAGTCCCGAGGACTCCTAACAGAGCTGCTCCCAGTGATGGTAATCCTCTTTTCCTCATACCGTCTCAAGAAAAAAAGGTCAAAACCCCCATGTCACAAGTTCAGAAAACTGCCAACACGCCGCTACCGTTCACAGTGGGAAGTCTCGCATCTTCCTCATCGAACGCTGCTTTTTCGTCACACGCAGAGAATGCTGCAACACAGGTTTTGCCTACCCAAATAGAGAACATCATCAATCCCATCATATTGTCCCAATTAGGAAATGCGCAAATTCCAGCTAATACTCTGTTGCCTTCACAAGCTGAAGGCAGCCCAAGTCCCTCGTCACATACTGGTGGTTCTGGCAAAGTGTTACCCTTGCATCTACAAGCTCTTGCAAGTCAGTTGCTCTCTTCTCAGATGAAGAAAACTACTCCAGCCCTTTCCACACCAATTTGTGCAACGAATCAAACCATCTCCACACACAGTGCTTCGGTAACGCCCATAATGAAGACACAAGGAAGTTTAATGAATCAGACTTTGACTCCTCAACAATTGCCCAGCTCAGTTATGTTACCCAGCATGCCCCATAGGGAAGGTAAGCTATTAGATTCACCAAGGGAGACAAGCACTAAGCCAGCGTTGGTGTCCCAGCTGAGCAGCGGTCCAGATTCTTTTACAGGCCCTCATTTTGCTGATGGTACAAATTCAGTTCTGTCTGCACACAATAATCAACATGTTTTACAGACTGCTCACACCGAAAATGCAGATCAGTTTCTGAATTGCGACTCAAATCTTGCAGCACCTGTGTCGGGTGAAAATTCCCATCTAGCTTACGATTCCAGTTTAAACAATCGGGGTGAGCCGCCACAAATGAACAGTGTAACAAAGATCGCATTGTCCCAGGTTGATGCGTCCAATCCTAATTTGCCTTCGAATATGGAGAATCTGACCCATCCATTGTTACCTTCTTATTTGGAAAACCTGAAGGTGCCGGCTCTGCCTGATAAAATAGAAACTGCTGTAAATCCACTCTTCTTGCCCCAATTGGAAAGCAGTTCCTTCCCCAGTTTCTCTTCCCAGGTGGAGAGAATTGTCAATCCTCAACTGCAAAGCAGCACAAATGCAGTCTTTCCATCCCAAGTAGTGGCAGTGCAGTCAACACCCAATGCCAGCCCTACAGAAACTATGGCCGTCCCAAAATCGGAGAACGATGCGCTGAAGGTGAAAAGAACTAAGCACAACAAAAGAGCAAAGTGGCCAGCGATCGTTAAAGATGGCAAGTTCATCTGTTGCAGATGCTTTAGAGAATTCCCCAGCCCCAAATCACTGGGCGGTCATCTGTCCAAGCGCTCTCATTGCATTCCGTTCGATGAACCGGATGCGACTCCGGAGCTGCGACAGGATCGAGTCCCAGTTTCGTTTCTTGCTGATCTCATTAATACATCCACTCTATTAAACTCACATCAGCAATTGCTCACAAATTTTAATCCTAATTTACCTTTCAAGGACCAGCCCAGCCAGTCATTGGGAACCGGTAACCATACAGATACAAGGTACTTCCCTAATGTTATCTTTCCGCAAGCTAATGGTTCAGCTTGCGATCCAAATGAAGTTGAACAGAATGGTGAGATTCTGAAACAAGCTCTGGAAAATACAGGCGTTCCTAATCTCTTTGACCCTTCTGCAATGCCACAGCAGACGTTCCAAAATCCTTCTGCCAGTTATCATCTGGATGGGCGCTTGCCAGAGAGCACAGTCATACAGCACACAGGAAAAATCAAGAAGTCCGAGAGTGACTGCTCTGGAGAGGATTATAGCAAGGCAGAGtctgcattttgtaatgatATTTTCTCAGACCCTCTTCTTTCCCAGATGCTGGCCGAAAACAATTCACAGGCTTCTTTAACTAACCTTGCTCTGACCACAAACCATCTAAACCAGATGTTACGTGCTGAAACTCTCTTAAATAAGAGCAAGGGGAGTGAAGAGCCTCAGAGGAATGCTGGGACTCCACAGCAGAACATCTTGTCAAACGACAGATTGCTGGCTGCGATGGCCAATCTCTCCCAAAACTTAGTGTCTAATCAGTTGCTACAAATGACCACCCCAAACTCTCAGCAACCTCTGCCAACGCAAGGCCCCCCTGAGGACGCTGCTCCAATTAAAAAGAACGTGAGGAAAACATTGCGTGACCAGATTTTAGCTGCTGACCTTTTAAAATCTGGGAAGGCAGGTCATGTCTCGCATCTGTCCGGTGTTTCAGCGCAAAGCGTTTTGCAGCAGAGATCAGACTTCCAGAACCTAACCAGCGTACCCCAAGCTTTAGACACGCATCGCAGTTCTCACTCGTCCGAGATGACGCAAAAGGCTCCTAACAGTGAGCACAAGcttgaaatgaataataatgtaatggatTCAGGGTCAGTCTCCCAGGGTGATGCTCCAGGGGCCCGGACAGATAACACTCATTTGAGTGGGGAACCCTCCCAGGAAAACACCACAAATGATCCGGGTTCGGGCTCTGCTACTCAAAGCAACGACGAAAAAGTGGCCGAAATTCTAAGTGCTTTGAAGAGACTAGATTTAAATAAGGAAAGTAGTGAGGATAGCCCACCAGTGGATAACTGTTCTCCAGGGAATCATTTATCTTCTACTGCTGTGACGCTGAATCAGGTGGAAGCTGTAAAGCCTCATGCGATTGTAACAAAAGATGCTCAGCCTGTTGAAAACCTTGTGAAACcctttgtgtgtgaaaatgaagGTTGTCCCTACAGTGCCATGACAAAGGatgctttatttaaacactATTCTAAAGTGCATAATTATACTGAAGACATGATGAATGAGATCAGGAAAAACCAGTTGAAGTTTGCTCCATTCCGCTGTCAAATCTGCAATAAGACGTTTACCAGGAACTCGAACCTGCGAGCGCATTGTCAGTCTGTTCATTGCTTATCGCAGGAGGAAATGATCAGGTTGAAAATAAAACGCCCGTATAGCAGAAAATCTGAGAAAGGTGAGGTGGACTTGTGCAAGAGCCGAGGGATGGAGGAGAAAATGAATCCTCTCTGCGTGGAAAGTGTTCCCATCTTGAACCAGATGAAACCTGAATATAGTGTTTCACAGCACTGTGTGATGATGGATATTAAACAGGAGCAAATGGAAGTGGCCACTGCCCAACATGCATTTCCTATTCATAGACATGTCAATGGAGAAAATTCAGAATACAGCAGAAATGCTTTCACAGAGCAAACTGCGGCAGGCCAGGCCATGCCAGAATTCATTGCAGGCAATCATCTGGCAATGGAACAGTCCACAGCTGAGATTCCCGTAGCCAAACAGACAATGGAAGGGCAACCACCACTGACATTGCCCATGAGAGGTCAACCTGCAGAAGTAAAGGCAACAGTGAGGCTTCCTGGAGCTGACCAGCCTTTAGAGGGGCAGCCTGCCATTGGGCTAACTGGGGCTGTCCAGTACTTGGCAGGGCAGCACGCAATGAGCTGCCTGACTCCTGGCGCCTCTATAGTGACACCGCCGGCCACAGGATTTCTTCCAGCCGCAAAGACTGCTGGTTTCCCGCTCCCTGGAAATCCTTCCCCAGAAAAGTTGAAGAAGCCTAAAGTGAGCAAGCCAAAAGTGGACAAACCGAAAATCGAGAAACCTAAGAAACccaaagagaagaaagaaaagaagccAGTGGCAAAGGAAAGCGAGAGCAATGAGTACAGTCCCTACAGGCCATACCGTTGTGTACACCAAGGTTGCTTTGCCGCTTTCACCATCCAGCAAAACCTAATTCTACATTATAGGGCTGTGCATCAGTCCGACCTGCCTCGCTTTGACCACGACAACGAGGAGGAATCGGATGAGGTCAGGGATGAAATGGAAGATGAGACGAGCCAGATTAAAGAGTTTAGATGCCAAGTCAAAGACTGCTCCAGGATATTCCCTGAAGTGACGAGTCTTCTGCAACATTACGTCCAGCTTCACAAGTTTACCCTGGATGAAGCTGGAGCTCTGATGTCCAACATGAACCTGGGGAGGTTTCAGTGTGACCAGACTGATTGCACGGCCTCTTTTACTGCCTTCTGGAAGTACATCAGCCACATCGAAGAGGAACACGAAAATAAAGTCATCAAGAGCGAAGGACCAGAAGGCCTGTTCAAGTGCGACTGTGAGGGATGTGACCGTGTCTACGCAACCAGATCCAATTTGCTGCGCCACCTCTTGAAGAAGCACAGAGAGAGCCACAAAGCCCATTTGATCCGGCCACGGAAAAAGCTTGGCCAAGACGGGGGTTCTTCATATAGACGCCCTCCCAAGAAGTCCAAGTTTTCGGGACTGAAAATGAACAATGGAAAAGAGAATGTGCAAAATAATAAGAAGCCCAAATTTAAATacgacaaaaagaaaaacagtgaccGGAAAAGAGGCATCTGGATTACAGTGGAGAAGCCGGTTCTGAAAACCAGCGCGGAAGCCATCGCAATGTGTACAAAGAAATTTCCTATGCAGTTTCCCTGCATGATCAAAGGCTGCGTTTCCGTAGTTAGCTCTGAACGGAACATATTCAGACATTATACAACACACAGTCTCTCAGACCAGTACATAGAGGAGCAGCGCAGTGATTTCATTCTCTGCAAGAAACGCTCGCGTCACCATTATAAAGACAAATCGTCCAGAAACGATGGCGAGACGGAGAAGGCTGGGGAAACGACATCAGAAACTTCTGACAATGAGGATGCCGTGGAAACCTGCCCTGAAGGAAGTGAAACGGAGAGTTCCAAGGCCACGTCTAGCAAGGATGAGGTCGAATCGTCTGACACAAAGCAGTCCACTGATGAAAGCTCTGAGACCATGGGGAAGAGGAAGTCCAGGAGAAGATGGGCCTTTACTGTGACTAATATGCTGGTGAAAAACAAGAGAGGGCGGCCTTTAAAGAAGAAACGCAAAGACATGATCCAGGCTAAGCAAAGGAGAATCCCGGAGAGATTGAAAGCCAAGTTACATAACGAAGCAAACAACACGTGTAGTGGCTCAGAATCCACCACCTCCTCCAGCCCTGCTCTCCCACAGCCAGACCAACCGCAGCAAAACATTGCTCTGAGTACATTCAAGCCCATGGGTTTTGAAGTGTCTTTCCTCAAGTTCCTGGAAGAATCTGCACACACTCCAAAGAGGAGAGCTAAAGAGAATCACTCTGAGATCCCATCCAAACGCCAGAGAACCCTTCAgcagaaatatggaaatatcATGTGCAGAAAGTCTGAAGCTCACATCAGGGCGAGAGACTGTCAGAACCTGATTGACTTTAGGAACCCCTTAAATCTCAAGTCAGTGAAGAATGTAAAAATTGTGGTAGACAAAACCTTCTCTGATGGGGCTGAGCTTTTGCTAAAACAGCTCCAGGAAATGCGACCCATAGTTATACTGAAAAAGTGGCTATACAGTTAAGTGGGAGCGGACTGGCTGAATGTTTCCATTAACCACACGTAGTACTCAGGATTAGAACTGCAGCAATCCATGTTGCAGActggtttttaaaaataataaacatttcagttatgCATAATTTAACACTAAACCCTATAAATGGTTCTCATGTCAGTGTTGGTACCGACTAAATCAAAGATTACATGAAACtgcattatacttttttttNNNNNNNNNNTTTTT

Function

GO:

id name namespace
GO:1902562 H4 histone acetyltransferase complex cellular_component
GO:0031248 protein acetyltransferase complex cellular_component
GO:0000123 histone acetyltransferase complex cellular_component
GO:1902493 acetyltransferase complex cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2270 lncRNA upstream 58634 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 58634 11368023 ~ 11403029 (+) True G1902
TU2254 lncRNA upstream 233388 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 411019 11050151 ~ 11050644 (+) True G1855
TU2056 lncRNA upstream 1003898 10431664 ~ 10457765 (+) True G1747
TU2383 lncRNA downstream 87556 11570052 ~ 11570410 (+) True G1987
TU2400 lncRNA downstream 242587 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 330626 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 423487 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 543630 12026126 ~ 12028193 (+) True G2042
AMCG00003603 mRNA upstream 1600 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003599 mRNA upstream 118639 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003598 mRNA upstream 188503 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003593 mRNA upstream 329193 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003594 mRNA upstream 362703 11084163 ~ 11098960 (+) True AMCG00003594
AMCG00003606 mRNA downstream 7743 11490239 ~ 11491597 (+) True AMCG00003606
AMCG00003607 mRNA downstream 11456 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003608 mRNA downstream 27909 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003605 mRNA downstream 37010 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003609 mRNA downstream 60071 11542567 ~ 11559145 (+) True AMCG00003609
TU1883 other upstream 1680761 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2198195 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2809259 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4966758 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 7689 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 91235 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1554941 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1672564 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2936020 14418516 ~ 14419732 (+) True G2440

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035173 True 8412 mRNA 0.49 8 NC_007131.7 196541 ~ 211920 (-)