RNA id: TU2424


Basic Information

Item Value
RNA id TU2424
length 1531
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G2018
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11813122 ~ 11831420 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACTGTATTTCAGTCATGCAAAACACTTGgcctaataataatcaatagGAATAATACATAAGGTTTCTGTCCATGTGCATCTTGATATCAGATACTGTTACTTTCTGAAGCACAATGACTTAGTGTTTCAGATTTCTCCTAATCTAATCTTTTCAACACACACATctactttgttttaaatatttctctaTATATGCAGATgtagtaatagtaattaatAGTTCCTCTGGATCCTAACAGCCTTACTCAATTTTTCTGGATTGTGTTGTTATCATCCATTCATAGACACTTAATCATTTTGAATTCTAATCAATTCAGGtgttttgttataattttgaaagcatttgtaAGAAACCTAAATTTCCTTCAACCCTCGAGAGCCACATTTCCCTGAACTGAACAAGCGATCGGCTTCACTCATCAGTAACTCATGTGTCCAGAGTCTTTAGAAATTAGTACTTGAGGGTGACCTATACAACAAACTGGATTTGGTCTTTCCAGGAACAGATCTGCCTCTACCAGCACAGGCCACGTCCCACAACCAACCCACTACTGACAGAGAGGGTCTTCTATAAAGTAAAGTGAAATAGTATATTCAActgtaatagaaaaaatatagtaatatttgaaaataaatcaatacattatatgTCTTAGCAGACATCATTATCCAGGTCAACTGagtttttacatacaattaccaatttatacagctggatttATACTGGAGCAATTCAGGTAGTGCTTTGTTGAAGGGTACTGCGACGGTGTCCCCCAACCCTCAtcttcagagtccagagccctgatcATTACTTCACACTGCTGACCTAAGCTTGATaagttaaatattgtaatattttagttctataattttatttccaaaatttTTTGGATCTGCATGTAAAGAAACTgtcaaagaaaaataaccttTAAGTCATCAAAATCTAATGAAAAGTTAGCAAATTACCTTTTTGTGGCAGACCCTTAAACAGAAAGAAATTAGAGAaattaacaacagcaacaccagAACAAGATATAACATATCATGCTTTGTCAtgtttttctggatgttttcGATTATGGAACATGTTATGatagtttgttttgaaattcaGAACTATCAGAACTAAGTACATATTGACCtctgaaatatttcaataaCACCTGTAGAAatgtctgtatatttaattgGGGGAGGCTTGatagaaaaatatttcaagTTTATTGACtgaaaagaatgaagaaaatacattttccagcaCTACATTTTGCTTgagtaaagcaaaacaacaacaagcactTACAAAGATTCCTGGGAATCTCTGCCAATAACTTGGAGTAGGTCTCTGTAAGCAGTCAGAGGCCTGGTTCACAGCCTGACTTCTCCTCAGTAAATCCTCATTCGCATGGGGCAGACAGGACATAGTTCCTACTATGTTTTCCTTGTTCACCAGTATGCTGCTCTCAGTCAAATCGAGTTCTTTGTTGTGTCCACCCCCAGAATGGACTTCTTATTGGCTtttgtttttt

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2400 lncRNA upstream 83131 11725083 ~ 11729991 (+) True AMCG00003614
TU2383 lncRNA upstream 242712 11570052 ~ 11570410 (+) True G1987
TU2326 lncRNA upstream 330191 11462338 ~ 11482931 (+) False AMCG00003604
TU2270 lncRNA upstream 410093 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 410093 11368023 ~ 11403029 (+) True G1902
TU2434 lncRNA downstream 74563 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 194706 12026126 ~ 12028193 (+) True G2042
TU2511 lncRNA downstream 256117 12087537 ~ 12088986 (+) True G2086
TU2565 lncRNA downstream 388902 12220322 ~ 12259643 (+) True G2125
TU2587 lncRNA downstream 556183 12387603 ~ 12388058 (+) True G2139
AMCG00003615 mRNA upstream 70484 11732555 ~ 11742638 (+) True AMCG00003615
AMCG00003614 mRNA upstream 85336 11725775 ~ 11727786 (+) False AMCG00003614
AMCG00003609 mRNA upstream 253977 11542567 ~ 11559145 (+) True AMCG00003609
AMCG00003605 mRNA upstream 286048 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003608 mRNA upstream 297643 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003620 mRNA downstream 8317 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003622 mRNA downstream 20407 11851827 ~ 11856733 (+) True AMCG00003622
AMCG00003624 mRNA downstream 175016 12006436 ~ 12024934 (+) True AMCG00003624
AMCG00003628 mRNA downstream 301426 12132846 ~ 12144928 (+) True AMCG00003628
AMCG00003630 mRNA downstream 316220 12147640 ~ 12148899 (+) True AMCG00003630
TU2385 other upstream 235793 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 321679 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 2032220 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2549654 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 3160718 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 1206017 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1323640 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2587096 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4204243 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 5850397 17681817 ~ 17683988 (+) True G3047

Expression Profile