RNA id: TU2400


Basic Information

Item Value
RNA id TU2400
length 2740
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00003614
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11725083 ~ 11729991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGCGGTTCTGCTCCTCCTTCAGCCCGTTTGTTGGAGAGAGGGAGCGCTGGGATGAGAAGCGAGCTCCGAGTGGGAAGATcgtgtaatattttaaatagGCACTGAAGTCCAAAACATCTAGAGCTGACAGAGCCCCTTTTCCCTGCAGTCAGTCTGTGCTCAGCCTGAGCAAATGTGACTTTCCAGGCCAGAACCTGAACGCCGTTGGTCAGAAGAACAAGCACAGCTCACCGAGCGAGGCCTCTGCAGCCAAGAGGAATGAGAACACCATCCGGCACAAGTCCCCCCTACTGGAGTTTTACCGCCAGGAAGGCAAAAAGCCTCTGAACTCCACagataattttaaaattgtcaAAGTCACTACAGTTGAACCCATTCTTGAAGAAAATCTTAAAGATGGTGAGAAGAACTACGCTGGTCCAAAATTTACTGAGCCTCCTTCGCCCAGCGTCCTGCCCAAGCCCCCGAGCCACTGGGTGGGAGAGAACAGCCCACGACATTCCGACCACAGCCGGGCGCTCATGACCGTCCACCTGAAGTCTCTGCTGAAGGTCCAGGCAATGCCATGAATTCAGATTCAGAAAccttgaggaaaataaataaatcgtaATTTGGCACTGAAGAGCACTGGAATCAGAAGTTGTTGCAACAGCAGGTCCTGTGTTTTggactgtattgtattttacacttGTGCAGAACAGCGGCCTTGTACAGTTTAGCAGATTTTTAATGAacttgtgtaaatgtaaatattgtaaaccatgtaatatttgtgtatatttttcatgttattttaacaaaagtaaaatatagttttgttaCTGAAACCTAAACGTATTATGCACCGCAAGTTGGTGCACTttctaaattgttttattttgtctatgAAAATGGTGTACaaaaatgggaagaaaaaaaaagactacaaTGCCCATTTGGGTACATTTGAAAGTAAGAAACAATTTTGATATTCTTACAAATTTGCACAAGACTGAGAACCTAACAGGTGCAGAGGCAACTAGTCTgtagcaaaaaaacaaaccaaccaacctGTGGTTTCTTTAAAAAGAGTCAACTTAAGTGGCTGCTTGTCACTCAATGCACTGCAGAGGAAACAAATTCATGTGGCACAATCTTTGTGAAGCCCAGgagtggaaataaaaatgtgaacatttaatccataattgtgACCTCACATGAAGACAGCTACCTGCTCGAACTGTTCCTTTACTTGCAATTACCAGCACTGACCTAATgctaagaaaaatacatttcttttaccTGCCATTTCCCCCCCCGACACATGGATGTGGAGATCCCAGtaaaatgcaattgaagatgCCCAAAGAAGGAAGATGACTGTGATTGTCTTGCTTTATGTAAGGACACATTTGAAAGTTATGAGAAGATAATATGACCCCAAATAGTTAGGCAGCTATTTTGAATTCTTGGATCTCAGAAGACGCACAAATGGAAAATACCATTCAGTACCAAAAATCTTGATAATTTGTTGCAACACCTTTTGTAAACGTCTGTTTCAGcttcactaaaaaaaaaaaaaaaaaaaaaaagcatcactGCTTATTTCCCcacataattacaataattggctagaaataattataatttatatatatattacaaaaaaaagttataaaataaaatttattTGGCCTCCCCCAATATggtcttttgtatttttgtttgtttttggatcaTTACTGTTCTAATTTGTAAATGAAGTAAGGCAAGAGCAAATGTTAtatacacgtacacacacacacatcagcccatatcaatccactgctggatgaaagcctccccaagatgtttctactTGCTTTGAACTATTGCTTCCCTTTCCCAtttcatgcctgcaaagtttactATTTCATCCTCCCATCTTTTATGGGTTTGtcttatagtttttttttttttttttttttcatctcgtGGGAAAAATTcagtagcttcctttgtccacctttggtctgttcttcttgcagtgtgtccgacCCAttcccattttaacattttcacacaatGGTGTGACATTTTTGTTCTAGGATCCATTCGTTACCATCTCtatatatctgcaaattattagTGTATgtagagcatttattttttcgtATATAGAAATACTTCATACAGATAATTATTACATTGTACGGGGATCTTCATTCTATGGATGTGTGGAAGCTGTAGTTGGCCTTTATGAAATGCATCGCTAACCATCccaatttaagaagtgaaattgtaagactttttttctttaaacattctTGCACTGGGTAGTTAAGTAGAAGAAGTGGATGGAGTCTGAAAAGCTgagtatttgtttatataacttTGGACACTGAAGCCgctttatactttttattaaaataactataaagaATGTCCATTGTCTTTAACCAGCCTTGCAGGATTCAGCTAAGCTAAGCCCACACAGGCCCAGTGGGGTTCATGTCTCTTAACATCTGGCGATTGAATTAGTCATTTCACTGCACTATTTTTTCGAATAGCATCAAACGAATAGACTCCCCCTTGTGGCAACACCTGTGAATGTTGTGGATTGCCCTAAAAATGCTGACCACTTGTTTTAGGATGGCAGTCATAAGCAACAGAAATCCTGTAGTGCGTCCATTGTTACCTTGTATATAAacaatcatatttgtttttgatgggGTTCATGAACAAAATAGCACAATATTTCTCAACTTGCTGGGACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2383 lncRNA upstream 154673 11570052 ~ 11570410 (+) True G1987
TU2326 lncRNA upstream 242152 11462338 ~ 11482931 (+) False AMCG00003604
TU2270 lncRNA upstream 322054 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 322054 11368023 ~ 11403029 (+) True G1902
TU2254 lncRNA upstream 496808 11227959 ~ 11228275 (+) True G1891
TU2424 lncRNA downstream 83131 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 175992 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 296135 12026126 ~ 12028193 (+) True G2042
TU2511 lncRNA downstream 357546 12087537 ~ 12088986 (+) True G2086
TU2565 lncRNA downstream 490331 12220322 ~ 12259643 (+) True G2125
AMCG00003609 mRNA upstream 165938 11542567 ~ 11559145 (+) True AMCG00003609
AMCG00003605 mRNA upstream 198009 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003608 mRNA upstream 209604 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003607 mRNA upstream 216777 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003606 mRNA upstream 233486 11490239 ~ 11491597 (+) True AMCG00003606
AMCG00003615 mRNA downstream 2564 11732555 ~ 11742638 (+) True AMCG00003615
AMCG00003621 mRNA downstream 94794 11824785 ~ 11828430 (+) True AMCG00003621
AMCG00003620 mRNA downstream 109746 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003622 mRNA downstream 121836 11851827 ~ 11856733 (+) True AMCG00003622
AMCG00003624 mRNA downstream 276445 12006436 ~ 12024934 (+) True AMCG00003624
TU2385 other upstream 147754 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 233640 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 1944181 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2461615 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 3072679 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 1307446 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1425069 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2688525 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4305672 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 5951826 17681817 ~ 17683988 (+) True G3047

Expression Profile