RNA id: AMCG00003606


Basic Information

Item Value
RNA id AMCG00003606
length 953
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00003606
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11490185 ~ 11491597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTTGCGGGTGTGTTTAGATTTGTGTTTCCCTCCAGTGTAAGTTAAATTACTCTCTGTTTTAAGAGTACCCTTATCACGCTGTATGTGTCTGTGCTACCGACACAGAAACAAAGGTCACGAAAATGCAATATGAAGTGCAAGTATAAGCCTGAAGGCTTTGGTTCCAATACAAGAAGTGATGCGCATACCCGGGCAATGTCGTCTCAGGGTCCTGACCCGGGCGGTGGCAAGACAGAGCCTGCAGCCGAGAAGGGCTACCGGACCCCCGGGCTGAGGGGAGTGCAGACCACGTCCCTGTTCCGGGCAATAAACCCCGAGCTCTTCATTAAACCGAACAAGCCCGTGATGGCCTTCGGGCTCCTCACCATCTCGCTCTGCGTGGGGTACCTCGGGTACCTTCATGccaccacagaaaacaaacaggactTGTATGAAGCCGTGGACAGCGAGGGAGTGAGTCAGATGAGAAGGAGGACATCCAAATGGGACTGATCGCTGACGGTTTCCTGGACATAAAGACACTCTCTTTGCCTCAATCTATGTTTATGAATTAGAAAAACCGAACAATGTTAATCTGGAGGTTCTGCGGGCCTTCGCGCTTTCTAACGGCGTTGACCATCTCAGCTCTTGTTTTTGGATCCAAACTTTGGTGGTGAAAATCTGAATTCGGTAGCTGGTGTAAATGAATGTTGGAaccgtgtaaatatttgtttcctaGTGAATAAGCAGCAACACATCTGCCGAACATGTTcattatatcaaaataaatacattctgttcAAATGATTTTCCTTAAATTCACTGttatggtttttatttattttccctgcaaATGAATGGGAATGTTTAGCTCACGTAGTGAGAAATATCTGCTCGTAGTATCTTTCTTCTTTAACTTGGCAGTGCCACTACAGAAGTTAATATAATTACTAATGTCAATATACATCAAGA

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0022900 electron transport chain biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2326 lncRNA upstream 7308 11462338 ~ 11482931 (+) False AMCG00003604
TU2270 lncRNA upstream 87210 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 87210 11368023 ~ 11403029 (+) True G1902
TU2254 lncRNA upstream 261964 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 439595 11050151 ~ 11050644 (+) True G1855
TU2383 lncRNA downstream 78455 11570052 ~ 11570410 (+) True G1987
TU2400 lncRNA downstream 233486 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 321525 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 414386 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 534529 12026126 ~ 12028193 (+) True G2042
AMCG00003604 mRNA upstream 7743 11461663 ~ 11482496 (+) True AMCG00003604
AMCG00003603 mRNA upstream 30176 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003599 mRNA upstream 147215 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003598 mRNA upstream 217079 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003593 mRNA upstream 357769 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003607 mRNA downstream 2355 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003608 mRNA downstream 18808 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003605 mRNA downstream 27909 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003609 mRNA downstream 50970 11542567 ~ 11559145 (+) True AMCG00003609
AMCG00003614 mRNA downstream 234178 11725775 ~ 11727786 (+) False AMCG00003614
TU1883 other upstream 1709337 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2226771 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2837835 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4995334 6487692 ~ 6494905 (+) True G1012
TU2385 other downstream 82134 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1545840 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1663463 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2926919 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4544066 16035663 ~ 16039640 (+) False AMCG00003712

Expression Profile