RNA id: TU2454


Basic Information

Item Value
RNA id TU2454
length 2068
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G2042
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 12026126 ~ 12028193 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcagttctgaaggtgaaagggggtcaaacacagtatgtGTATGGtcttcctaataatcctttaggtgagtgtatatgaaaaTCCTTTTGGCTTCCCCTTGTAACCAGGAATTTATAGTCTACTATTGTAAATATGGATGGACCGATCGATTGGGCACCATTTGGAATCGGACGATTTTCTTTCTAATTATGAGATCGGTGATTGGCAGatattcctttaatttgtgcGATACATTTGAACTTATCAATTTACGCAAATAACTGATCCTTTCCAGAgtttgtacatttacagttagGCACTTCCAACCAATAAAAGATAGAGACTTGactaatattaacaatataataatgacattaagccctgcatataatacattttaatttgaattgaacttaatattgaaaaagcatccaaaacatgtttgcatctaaaaattataaatgacaagacagactactaatataataatactaatagtatatacaaaatattgtatatttaaattcatattaaaagtaTATCTGTCCTATTATGTTCTATTATAACCAATTGTTAATAGGGCTTAACGTGATActtatacttttaatattactttaaagGCTTACTTTTTTGAATGTAGTACTGGTAGGTGCCAGTCTTTTAATTTATGAAGAttgcatataaataatatgcTTTAAGTAGGCTACATTAATCCACTTTAAACATTGATTGTCATGTCCACGGCCTGACATACCCCATGTTTGCCTTGATAAATCTAATTTCTGCCTAGGCCTCTGTCCCTGACTATTATCATTCACCACACCTGTACACTGTTATTTGCTTATCTCCGCTCTGAATATTGAAACCCCAGCCTTCTCTACAGTCATTGTGAAGTCTAGTTTGCCTTGTGTGACATTTCTGAGCATTTCCCTGGTTTTCTGATCTCCTGCATTTCTGAACTTTGACTGTCCCTCGTTTACCAACTTTTGGATTGCCTTGCCTTGTTTGCCTGTCACCATACCAAACATAGTGAGTTTCTGAAGCAGTGTGAAGGCAAAGGAGGTGGGTACAGCCACACTGACACTAACCCAGCCATCAGTACAGGCAACTTGAGCGAGAGACCAAACGTACAGCAGTGACAGCCACAAAGCAAAGGGAAACAGCCAGAGTGCTGGAGTTCATAGCCACATGTGGCTATCTCATAGAACAATTGTAGCTAACTTGATTTAGGTGAAGTGTTTTATTACAGTAGTAGTGTACatcattgattattattaacaataaaatctaaattgtaCCTCATTGATATGAATCTGGAAGCAGAATTGATTGGCGCATTATGTTCACATTTGAAGACATCATTTCTTGAATTGAGGAGAGACGTGCCAGATCTCATCAGTCAAGttccagtgttttgtttataatagaatcgtgaaataaatgtatttagctAAAATGCTCTGGTTTATTAGCATTTAGTGTGGCCAAAATGGGTTGCCCACTCCTGGTGTAGACCCTATTGAAATTGCACCGCACTGACTAAAAAATGTATGTCGCGCAATCTTAGTAATGCCTCTTAATGCATATGTCAACATGAGTACAatctgttttatacatttttatacataccTGTGcagaccgcccagcagatcctataTGGACCGGCCAGAGGACTGACATCCACATCTCTgaggtggcgtgtcgtctgcgcggtgaaacaggccctgtgagAGTGAtggaacatctgtctgttcaacaagcaggagctggacccaaaaGTCATTGCACAgaggggcatggtcctagtACGAAaccatgtcaatctggagatccaccagaggggcaaggaggaagccttaaGGAACTGTAAGATCCAggatctgggggagcttagaATCCCATGATGGGATACCACCTCTGGTGAcggatactccccctgctgaagcccgagtccaagaacatttattcttttattgaaaaattattgtatttaaaaacaattttaattgcttttaattaagttaattgtttaaatgcacttttaaaCTTGGTTGatcagtggttttgttttgttcttttaatgttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2434 lncRNA upstream 119938 11905983 ~ 11906188 (+) True G2027
TU2424 lncRNA upstream 194706 11813122 ~ 11831420 (+) True G2018
TU2400 lncRNA upstream 296135 11725083 ~ 11729991 (+) True AMCG00003614
TU2383 lncRNA upstream 455716 11570052 ~ 11570410 (+) True G1987
TU2326 lncRNA upstream 543195 11462338 ~ 11482931 (+) False AMCG00003604
TU2511 lncRNA downstream 59344 12087537 ~ 12088986 (+) True G2086
TU2565 lncRNA downstream 192129 12220322 ~ 12259643 (+) True G2125
TU2587 lncRNA downstream 359410 12387603 ~ 12388058 (+) True G2139
TU2631 lncRNA downstream 874442 12902635 ~ 12903622 (+) False AMCG00003643
TU2723 lncRNA downstream 1046495 13074688 ~ 13080021 (+) True G2250
AMCG00003624 mRNA upstream 1192 12006436 ~ 12024934 (+) True AMCG00003624
AMCG00003622 mRNA upstream 169393 11851827 ~ 11856733 (+) True AMCG00003622
AMCG00003620 mRNA upstream 185630 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003621 mRNA upstream 197696 11824785 ~ 11828430 (+) True AMCG00003621
AMCG00003615 mRNA upstream 283488 11732555 ~ 11742638 (+) True AMCG00003615
AMCG00003628 mRNA downstream 104653 12132846 ~ 12144928 (+) True AMCG00003628
AMCG00003630 mRNA downstream 119447 12147640 ~ 12148899 (+) True AMCG00003630
AMCG00003634 mRNA downstream 821940 12850133 ~ 12854702 (+) True AMCG00003634
AMCG00003639 mRNA downstream 838224 12866417 ~ 12868471 (+) True AMCG00003639
AMCG00003633 mRNA downstream 844320 12872513 ~ 12880357 (+) True AMCG00003633
TU2385 other upstream 448797 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 534683 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 2245224 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2762658 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 3373722 8649125 ~ 8652404 (+) True AMCG00003534
TU2685 other downstream 1009244 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1126867 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2390323 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4007470 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 5653624 17681817 ~ 17683988 (+) True G3047

Expression Profile