RNA id: TU2383


Basic Information

Item Value
RNA id TU2383
length 359
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1987
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11570052 ~ 11570410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTCCACACATGGATGGAATTGTATTATGAGGTAATTATACATCTATAAAGAGGATTGCTGTACAGCACAAAGCTGTAAGAGTGATGTTCAGGGAGTAGCTCAGCCAAAATGTCACAGACAATCACAAAGAACATCTCTAGGATGAACAAGAATCGGACAAAAGCCACAGAGATCAACATCCCTTGCTGCACTATATAATATTCCAATATTAAAATCTGTTGCAGTGAAgcttacacaaataaaatacatgaatggcaataacatatgttttatattgcaggagaaataaaaacaaaactagctTTTCTGTAAATCTGTTCATTTGCCATCTGTTTTCGTACTGGTTTATATATCTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2326 lncRNA upstream 87121 11462338 ~ 11482931 (+) False AMCG00003604
TU2270 lncRNA upstream 167023 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA upstream 167023 11368023 ~ 11403029 (+) True G1902
TU2254 lncRNA upstream 341777 11227959 ~ 11228275 (+) True G1891
TU2211 lncRNA upstream 519408 11050151 ~ 11050644 (+) True G1855
TU2400 lncRNA downstream 154673 11725083 ~ 11729991 (+) True AMCG00003614
TU2424 lncRNA downstream 242712 11813122 ~ 11831420 (+) True G2018
TU2434 lncRNA downstream 335573 11905983 ~ 11906188 (+) True G2027
TU2454 lncRNA downstream 455716 12026126 ~ 12028193 (+) True G2042
TU2511 lncRNA downstream 517127 12087537 ~ 12088986 (+) True G2086
AMCG00003609 mRNA upstream 10907 11542567 ~ 11559145 (+) True AMCG00003609
AMCG00003605 mRNA upstream 42978 11519506 ~ 11527074 (+) True AMCG00003605
AMCG00003608 mRNA upstream 54573 11510405 ~ 11515479 (+) True AMCG00003608
AMCG00003607 mRNA upstream 61746 11493952 ~ 11508306 (+) True AMCG00003607
AMCG00003606 mRNA upstream 78455 11490239 ~ 11491597 (+) True AMCG00003606
AMCG00003614 mRNA downstream 155365 11725775 ~ 11727786 (+) False AMCG00003614
AMCG00003615 mRNA downstream 162145 11732555 ~ 11742638 (+) True AMCG00003615
AMCG00003621 mRNA downstream 254375 11824785 ~ 11828430 (+) True AMCG00003621
AMCG00003620 mRNA downstream 269327 11839737 ~ 11840496 (+) True AMCG00003620
AMCG00003622 mRNA downstream 281417 11851827 ~ 11856733 (+) True AMCG00003622
TU2334 other upstream 78609 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 1789150 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 2306584 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2917648 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 5075147 6487692 ~ 6494905 (+) True G1012
TU2385 other downstream 3321 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1467027 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 1584650 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 2848106 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 4465253 16035663 ~ 16039640 (+) False AMCG00003712

Expression Profile