AMCG00003712 (extl3,LOC106571659,LOC106608199)


Basic Information

Item Value
gene id AMCG00003712
gene name extl3,LOC106571659,LOC106608199
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 16024871 ~ 16039640 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003712
ATGACGGGATATACCATGCTGCGAAACGGCGGGGGTGCAGGGAATGGGGGTCAGCCATGGGTGCTGCGCTGGTCGAACCGGATCCGCCTGACCTGGCTCAGCTTCACGCTGTTCGTCATCCTGGTCTTCTTCCCGCTGATCGCCCACTATTACCTCACCACCATCGACGAGGCAGAGGAGCCCGGCAAACGCATCTTCGGGCCGCGGCCAGGCAGCGAGCTGTGTGAGGTTAAGCACGTGCAGGACCTCTGCCGCATCCGTGAGTCTGTCAGCGAGGAGCTACTGCAGCTGGAGGCAAAGCGACAGGAGCTGAACGGGGAGATCGCCCGGCTCAACCTGAAGATCGAGGCCTGCAAGAAGAGCATCGACAACGCCAAGCAAGACCTGCTGCAACTCAAGAATGTCATCAGCCAGACGGAGCACTCCTACAAGGAGCTCATGGCACAGAACCAGCCCAAGCTCTCTCTCCCCGTGCGCCTGCTGCCGGACAAGGACGACGTGGGCCTGCCTCTACCCAAGTCGGCACGCTCCTGCCGGCTGCACTCCTGCTTCGATTACTCCCGCTGCCCGCTGAGCTCGGGCTTCCCTGTCTATGTGTACGACGCCAGCAGCTACCCCTGGGGCGAGGGCCTGGACCCTTTAGTCAAGCAAGCTTTCGCAGCCTCGGCCAAAAGCAGCGTCTACGTCACGGACAACCCTAGCATTGCCTGTCTGTACGTGGTCCTGGTCGGGGAGCTGCAGGAGCCCCTCTCCTTGTCTCCGTCCGATCTAGAGAGCCAGCTGCACACTTTGCCGTATTGGAGGACTGACGGGCACAACCACCTGCTGGTGCACCTCTCCCGCAAGTCCATGACTCAGAACTTCCTGTTCAACGTGAGCACAGGCAGAGCGGCCATGGCCCAGTCCACCTTCCTGGAGAGTCAGTACCGAGATGGCTTCGACCTGGTGGTATCACCCTTGGTTCACGCTCTCTCTGAGCCCAACTTCTTGGAGGTGCCCTCCCAGGTGCCGGTGAAGAGGAAGTTCCTCTTCAGCTTCCAGGGGGAGAAGGTGGAGTCGCTTCGGAACAGCCTGCAAGAGGGGCCCCCCCGCTCCTTCGAGGAGGAGATGGAAGGGGACCCCCCTGCGGATTACGACGACCGCATCATCGGCACCCTCAAGGCGGTGCAGGACAGCCACCTGGACCAGGTGCTGGTGGAGTTCACCTGCAAGAACCGCCCACGCACAGCCAGCCTGCCGACCGAGTGGGCGCTGtgtggggagagggaggagaggctGGAGGTGCTCAAGGCCTCCACATTCGCCCTGGTGATCGCACCGGGTGACGGCCGGGTGGTGGCTTCGGCCGGCTGTGGCATGCGGCTGTTCGAGGCCCTGGAGGTCGGCGCCATCCCCGTGATCCTGGGCGACCAGTCCAGGCTGCCCTACCACCAGCTGATCCGCTGGAGCGAGGCGGCACTCATCGTGCCCAAGCCGCGCATCACTGAGGTGCACTTCCTCCTGCGCAGCATCTCGGACAATGACCTGCTGGCCATGCGCCGCCAAGGCCGCTTCCTCTGGGAGACGTACTTCGCCACGGCCGAGAACGTCTTCAGCACCCTGCTGGCCAGCTTCCGCACTCGCATCCAGATCCCCGCCGCCCCCATCCCAGAGGAGCCGGCCCAGGAGATCCCGCACAAGGCAGGCAAGGCGGCCGGCACCGACCCCAACATGGCGGACAACGGCGACCTGGACCTGGGGCCGGTGGAGACGGAGCCGCCCTACGCCTCTCCACGCTACCTGCGCAACTTCACCTTCACAGCGGCCGACACATACCGGGCCTGGAACCGGCCTCCGGGGCCCTTCCATCTGTTCCCCCACACCCCGCTGGACCCCCTGCTGCCCTCCGAGGCCAAGTTCCTGGGCTCGGGGACCGGTTTCCGGCCTATTGGGGGCGGAGCGGGTGGCTCCGGTAAAGAGTTCCAAGCAGCACTGGGCGGGAATGTCCCCCGAGAGCAGTTCACTGTGGTCATGCTCACCTACGAGAGGGAGGAGGTGCTGATGAACTCTCTGGAGAGACTCAATGGGCTTCCCTACCTCAACAAGATCTGTCCGCAGGCAGTAGTGTGGCGCGAGGCTAGGGACCGCATTGTGGGGTTTCCCGGGAGGTACCACGCCTGGGATGTGAACCACCAGTCCTGGCTCTACAACTCCAACTACTCCTGTGAGCTTTCCATGGTCCTGACTGGAGCTGCCTTCTTTCACAAGTACTACGCCTACCTGTACTCCTACGTGATGCCTCAGGCTATCAGAGACATGGTGGATGAGTACATCAACTGTGAAGACATCGCCATGAACTTCCTAGTCTCCCACATCACCAGGAAACCCCCCATCAAGGTTACGTCTCGCTGGACCTTCCGCTGCCCCGGCTGCCCCCAGGCTCTGTCTCACGACGACTCCCACTTCCACGAGAGACACAAATGCATCAATTTCTTTGTCAAGGTGTATGGCTACATGCCCCTGCTGTACACCCAGTTCCGAGTGGACTCGGTGCTGTTCAAGACCCGGCTGCCCCACGACAAGACCAAGTGTTTCAAGTTCATATAG
>TU3283
gtgagtgtgggcGTTCCGGGAGAATAGAGTACCACTGTGAGAGGTTCACTGAAGTGTttcataacaattaaaaaacaatatcatcACTGCATAAACTACAGATTGtgcgtgtctctctcttcctcccagAGTGTGGCGCGAGGCTAGGGACCGCATTGTGGGGTTTCCCGGGAGGTACCACGCCTGGGATGTGAACCACCAGTCCTGGCTCTACAACTCCAACTACTCCTGTGAGCTTTCCATGGTCCTGACTGGAGCTGCCTTCTTTCACAAGTACTACGCCTACCTGTACTCCTACGTGATGCCTCAGGCTATCAGAGACATGGTGGATGAGTACATCAACTGTGAAGACATCGCCATGAACTTCCTAGTCTCCCACATCACCAGGAAACCCCCCATCAAGGTTACGTCTCGCTGGACCTTCCGCTGCCCCGGCTGCCCCCAGGCTCTGTCTCACGACGACTCCCACTTCCACGAGAGACACAAATGCATCAATTTCTTTGTCAAGGTGTATGGCTACATGCCCCTGCTGTACACCCAGTTCCGAGTGGACTCGGTGCTGTTCAAGACCCGGCTGCCCCACGACAAGACCAAGTGTTTCAAGTTCATATAGACTTCCAGGGCAGCTCGGcggaggagggaggggagcgAAGGATGGGAGGACGGAGGGAGGGACGGCGACCAATCAGAAGGTCACTCTGCAGGGCAGGCCTCGGGGCtttgtgttaaaaaagaaaCGAACTCCTGAGAAGTGGCGCAATGTTGCTCGCTACATCCTCTTGGCAGCAGCCCAGTTTTGCAGGTGAAAGACGAGCCGCACAAAACACACGAGAACACGAAGCCTTTGTTGTCCTTGCTGTTGTCGTCATcgttgtcgttgttgttttaCCAGTGACCACTACCGATTCAGAGTTTCACACCACTCTGTCCACCTCCACACACTGACTGGATTACCCTCACGGCCAATTTCGGCCAcaaaggaattattattatctccAATCTTAAGGATGCCTGAGGCGAGATGGGCAGACGATTTATTCGGCCTTCTCCTAGATggtttacacttttttttttttgttcattattattatttaaagaaactgcTGCATTTGTTACAGATGGACCTTGTACAGACAGGGGAAAACGTATGAGGTTGTCATTgcactgtttttaaatttaaattttaggttgttttttttattgtcaattttatttttcattttaaaacttaatgtTCGGTAGTGGGTCCATCTGGAAAGCGCAGATGGTCCCCTCAGATGTTTGTATCCATTGGAATTTGTCCGTTTTAGCTTGTGCAAGTCCCACCAAAAACACAGTTCTGTGCTTCACTCTGCAGACGGGAACTATTGGGCGTTTTTGACGGCGTTTGCAGTGAACACAGACACAATACATGACCTAGAGATCCCATTCTGTGCTTGTTTGATTCTGTGAGATATTTAGCCGGGGTTTGTGCCGGGGCAATTCTCCCCTTTCTGCTGCAAGCACATCATCCAGTTTGATTAGTTGCACATTTAACTTCAAAGCGTATCGTTGGCTAGAAGTCGGTTTTTACTAAAGTCAAAGTTTTTCTCACTTCTAAGTAACAGCCTTGCAGGACAAGAGAGATCAAAACATGAATTCTTCTGACCTCCTCCTGAACCACAGGGGATGAAAAGCCTCCaggtttatatactgtacacgAAAGGTGACCCTCCAATGAATTTATTACCTGTCACAGAATGTATGGTTTCCAGTATCCAAAGTCCCATTTTATTAAAagatatgtatacatatatatttagttcttttctctgtttgtttgaaGAGGGTTTTGTATACCTGTGAGGTCCTGTCGTTCACCAGTGGTGTTTATGAATGCCAGGAGATCTGCCCGCTTCTCTTGGGCTTGTAGAGCGCCAGGGGTGCCAGTGGACGACCTCAGAGTAAACGGTTTGAACAGAGGCAGACATTCAGACCCAGATGTAATTATTAGCATTCTTATATCATGCCGTGTGAGGAGGAAATGGTCCCTCGCTTTGTCTTCAGGTGCAGCAGTAGATATATATTGTAGAAGGAAATCCATGTTGaaatttcacttttaaaatacattatattttt

Function

symbol description
extl3 Predicted to enable glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity. Acts upstream of or within several processes, including axon guidance; embryonic pectoral fin morphogenesis; and proteoglycan biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in nervous system and pectoral fin musculature. Orthologous to human EXTL3 (exostosin like glycosyltransferase 3).

NR:

description
PREDICTED: exostosin-like 3

GO: NA

KEGG:

id description
K02370 EXTL3; alpha-1,4-N-acetylglucosaminyltransferase EXTL3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003712 True 2586 mRNA 0.62 5 16024871 16038135
TU3283 False 2118 TUCP 0.44 3 16035663 16039640

Neighbor

gene id symbol gene type direction distance location
AMCG00003711 NA coding upstream 273010 15726442 ~ 15751861 (+)
AMCG00003706 NA coding upstream 626465 15394813 ~ 15398406 (+)
AMCG00003701 LOC106607895,LOC106571478 coding upstream 654005 15353478 ~ 15370866 (+)
AMCG00003705 NA coding upstream 690553 15334001 ~ 15334318 (+)
AMCG00003703 NA coding upstream 735295 15255056 ~ 15289576 (+)
AMCG00003713 NA coding downstream 31912 16071552 ~ 16079315 (+)
AMCG00003715 elp3,LOC107696156,LOC107698368,LOC107599080 coding downstream 97206 16136846 ~ 16161082 (+)
AMCG00003718 NA coding downstream 168207 16207847 ~ 16210277 (+)
AMCG00003720 mcm3 coding downstream 218814 16258454 ~ 16265698 (+)
AMCG00003719 NA coding downstream 248022 16287662 ~ 16288702 (+)
G2681 NA non-coding upstream 120051 15904483 ~ 15904820 (+)
G2641 NA non-coding upstream 605002 15416976 ~ 15419869 (+)
G2619 NA non-coding upstream 647234 15373195 ~ 15377637 (+)
G2571 NA non-coding upstream 894671 15128596 ~ 15130200 (+)
G2564 NA non-coding upstream 907899 15115705 ~ 15116972 (+)
G2719 NA non-coding downstream 41542 16081182 ~ 16084866 (+)
G2721 NA non-coding downstream 45500 16085140 ~ 16085992 (+)
G2755 NA non-coding downstream 190295 16229935 ~ 16231498 (+)
G2797 NA non-coding downstream 389394 16429034 ~ 16430555 (+)
G2833 NA non-coding downstream 553624 16593264 ~ 16597369 (+)
AMCG00003702 NA other upstream 706643 15301080 ~ 15318228 (+)
AMCG00003690 NA other upstream 1158113 14851752 ~ 14866758 (+)
G2440 NA other upstream 1605139 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 2818032 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2982274 13025569 ~ 13042597 (+)
AMCG00003744 NA other downstream 992930 17032570 ~ 17042594 (+)
G3047 NA other downstream 1642177 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2092279 18131919 ~ 18142633 (+)
G3108 NA other downstream 2107020 18146660 ~ 18152314 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other downstream 3232325 19271965 ~ 19397686 (+)

Expression


Co-expression Network