AMCG00003703


Basic Information

Item Value
gene id AMCG00003703
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15255056 ~ 15289576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003703
ATGTGTGCTGGGGATGGGAATGACTCTGGTCTTCAGGGCTGCAGACAGGGCCACCCTGTTTTGGCGGCGCGGAGGCAGTGGAGGAATGCGGGGCCCTTGCCAGATTGCTCCCAAGTGTTTGTGGAGAGCGGCCGTTGGGGTTTTCGACAGCAGCAGCTGGAGAGCTTTACACTGCGGCTGCGTCTGGCCAACACTTTAGTCCTGCCCTGTGTGGCGCTGCTAACGGTGCAGCTGCTGCAGTGGCCTGGGTTCACCTGTTCATTTCAAAGTCAGGACTGTGTCTGGGGCTGCGAGGTCGCTTGTGGTCAAGACCTGGAGTTCCATGGGGTGATGCGCTTCTACTTCCAGGACCGCGTGGCGGGAAACTTTGCCACCAAGTGCATCCGGGTGTCCAGCACGGCCACGACGCAAGATGTGATCGAGACGCTAGCAGAGAAATTTCGGCCCGACATGAGGATGCTGTCATCCCCAAAATATTCCCTATACGAGGTCCACGTCAGCGGGGAAGAACGGAGGCTGGACCTGGATGAGAAGCCACTGGTGGTGCAGCTGAACTGGAACAAAGACGACCGGGAAGGGCGCTTTGTCCTCAAGAACGAGAATGACATCATACCCAAGaaaacacagagcaaCGGGCCAGAGAAGCAGGAGAAAGAGGGGGTGATCCAGAACTTTAAGAGGACGCTCTccaagaaggagaagaagaaggagaagaagagagagaaggaggctTTCAATCGCGTTCCTGATGGAGATGAATACTCTCTGAGCCGGGAGGATGGCAGTGAGAATTCCAGACTTGCGGCTGAGGTGTACAAAGATATGCCCGAGACCAGTTTCACGCGCACCATCTCCAACCCCGAGGTTGTGATGAAGAGGCGGCGGCAACAGAAACTGGAGAAGAGAATGCAGGAGTTCCGAAGCAATGACGGGCGGCCCGACTCCGGAGGGACTCTTAGAATTTATGCAGACAGTCTGAAGCCAAACATCCCCTATAAGACAATCCTTCTGTCCACCACGGACACGGCAGACTTTGCCGTGGCAGAGGCACTGGAGAAATATGGTCTAGAGAAGGAGAACCCCAGAGAGTTCTGTATCGCTCGGGTGGTGCTTCCTCCTGGTTCTCAGCACTCGGATGACAAGGCAGGGAAGGAGACGATCCTGGACGACTCGGAGTGCCCCCTGCAGATATTCAGAGACTGGCCTAGCGACAAAGGTGCCCTGGTGTTCCAGCTGAAGAAACGGCCCCCAGACTACGCCCCGAAGAAAGGGCGCAAGATGGACGACAAGGTGTCCCGGGGGAAGCCCTTAGACGGGCTCCTCCATGGCCCCCTGCCCCCAGAAAAGCTTCCCTACCTGGTGGAGCTGAGTCCAGGGAGAGGGAATCACTATGCCTACTACAGCTATCGCCACCAAGAAGACGGCTCCGACTCCAGGGATAAACCAAAGTTGTATAGGTTACAGCCAAGCATCACCGAGGTGGGAACGGAGAAAGTGGATGAAAACTCCATCCAGCTGTTCGGCCCCGGGATCCTGCCGCATCACTGTAACCTGATGCACGCCGATGGCCTGGTTACTGTGACGCCCCGCAGCTATGAGGCCGAGACCTTCGTGGACGGCCAGCGCATCACCGAGACCACCGTGCTCCGGAGCGGCATGAAAGTGCAGTTCGGCGGCAGCCACGTGTTCAAGTTCGTGGACCCCAGCTACGACCATGGCATGGGCAAGCGTGGCATGGACTCCGGGCCCATGATGAAGACCCGGCACAAGTCAGGGAGTGTGCCCGAAACGACGTTTGACCTGCATGGGGACATCCACAGTGGGACAGCCCTGCCCACAAGCAAGAGTTCAGGAAAGCTGGACATGGACCGCAGCGGACCCCCGTCTACCCTGAGCGAGAGGAGCATGGTCAAGCCCATGGTGAGAGGGGAGCAACAAGACAGATCCCAGGACGGACTGGGGCCAGAACTGACGCTGCCGGCCAGCATTGAGTTCAGGGAGAACTCTGAAGACACCTTCCTGTCGGCCATTATCAACTACACCAACAGTTCCACGGTGCACTTCAAGCTGTCCCCCACCTACGTGCTGTACATGACTTGCCGCTACGTGCTGTCCAGCCAATACAGGCCTGACATGAGTGCCTCTGAGCGCACGCACAAGGTGATCGCCATAGTTACCAAGATGGTGAACATGATGGAAGGAGTCATCCAGAAGCAGAAGAATATCGCTGGGGCCCTGGCGTTCTGGATGGCCAACGCGTCCGAGCTGCTCAACTTCATCAAGCAGGACAAGGACCTGAGCCGTGTCACCCTGGATGCTCAGGACGTCCTGGCCCATCTGGTGCAAATGGCCTTCAAGTACCTGGTGCACTGTCTGCAGTCAGACCTCAATAACTACATGTCTGCTTTCCTGGACGACCCAGAGGAGCAAAACCCTCAGAGGCCCAGAATAGAGGATGTGCTCCACACGCTGACGGGCGCCATGTCCCTCTTGCGCCGCTGCCGTGTCAACGCCGCCCTCACCATCCAGCTGTTCTCGCAGCTCTTCCACTTCATCAACATGTGGCTCTTCAACAAGCTGGTGACCGAGCCCGACTCCGGCCTGTGCTCCCACTACTGGGGGGCCATCCTGAGGCAGCAGCTCAGCCACATCGAGGCCTGGGCCGAGAAGCAAGGCCTGGAGCTGGCCGCCGACTGCCACCTGAGCCGCATCGTCCAGGCCACCACCCTCCTCACCATGGATAAATACTCCATGCAGGATGTGCCCAACATCCACAACACTTGTTTCAAGCTCAATTCCCTGCAGCTGCAAGCCCTGATGCAGAATTACCACTGCGCCCCGGATGAGCCCTACATTCCTACAGAGCTCATTGAGAACGTGGTGTCCGTGGCTGAGAACACAGCGGACGAGCTGGCACGCAGTGATGGGCGGGAGGTCCAGCTGGAGGAGGACCCCGACCTGCAGCTGCCCTTCCTGCTGCCCGAGGATGGCTACTCCTGCGATGTGGTGCGCAACATCCCCAATGGCTTCCAGGAGTTCCTCGAGCCCCTCTGCCAGAGAGGGTTCTGCAGGCTGACCCCTCACCCCCGCTCCCCTGGCACCTGGACGGTCCATTTCGAAGGGGCTGACTGTGACAGCCATTTCTCTGCTGACAGTGCAGACCTGCCAATGCGCAAGGAACCCGAAGTTGTGACAGTCACTCTGAAGAAGCACAATGGGATGGGACTCAGTATTGTGGCTGCTAAG

Function

GO: NA

KEGG:

id description
K05702 AF6, MLLT4; afadin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003703 True 3246 mRNA 0.58 23 15255056 15289576

Neighbor

gene id symbol gene type direction distance location
AMCG00003694 NA coding upstream 98663 15144622 ~ 15156393 (+)
AMCG00003693 NA coding upstream 133490 15104744 ~ 15121566 (+)
AMCG00003695 NA coding upstream 158532 15065016 ~ 15096524 (+)
AMCG00003696 NA coding upstream 200685 15019408 ~ 15054371 (+)
AMCG00003691 NA coding upstream 249779 14996897 ~ 15005277 (+)
AMCG00003705 NA coding downstream 44425 15334001 ~ 15334318 (+)
AMCG00003701 LOC106607895,LOC106571478 coding downstream 63902 15353478 ~ 15370866 (+)
AMCG00003706 NA coding downstream 105237 15394813 ~ 15398406 (+)
AMCG00003711 NA coding downstream 436866 15726442 ~ 15751861 (+)
AMCG00003713 NA coding downstream 781976 16071552 ~ 16079315 (+)
G2571 NA non-coding upstream 124856 15128596 ~ 15130200 (+)
G2564 NA non-coding upstream 138084 15115705 ~ 15116972 (+)
G2563 NA non-coding upstream 140219 15114629 ~ 15114837 (+)
G2517 NA non-coding upstream 224688 15006346 ~ 15030368 (+)
G2446 NA non-coding upstream 833746 14420731 ~ 14421310 (+)
G2619 NA non-coding downstream 83619 15373195 ~ 15377637 (+)
G2641 NA non-coding downstream 127400 15416976 ~ 15419869 (+)
G2681 NA non-coding downstream 614907 15904483 ~ 15904820 (+)
G2698 NA non-coding downstream 743132 16032708 ~ 16032935 (+)
G2719 NA non-coding downstream 791606 16081182 ~ 16084866 (+)
AMCG00003690 NA other upstream 388298 14851752 ~ 14866758 (+)
G2440 NA other upstream 835324 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 2048217 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2212459 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 2338054 12902566 ~ 12917002 (+)
AMCG00003702 NA other downstream 11504 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 735295 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1742994 17032570 ~ 17042594 (+)
G3047 NA other downstream 2392241 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 2842343 18131919 ~ 18142633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000029_03855238_03922931 MLLT4, AFDN coding CI01000029 null 3855238 ~ 3923120 (+)