CI01000029_03855238_03922931 (MLLT4, AFDN)


Basic Information

Item Value
gene id CI01000029_03855238_03922931
gene name MLLT4, AFDN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3855238 ~ 3923120 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03855238_03922931.mRNA
TTTATTTATCAGTGCATATTATTCCAAAAGAAAAATTCCATGATTGTAAAGATTTTGGGAAATTCAGGAAAATTCATTGGTCAAAAGATACATCCTGCTCGGCCAGCTCAAATATCAGCCTCCGCTGCAGGTTACGAGTTTAATGTTGCCACACAGAGCTGCTCGTCTTTTCACACAACAGAGATGGATTTGGAATTCCATGGCGTGATGCGCTTTTACTTCCAGGACCGTGTGGCGGGGAACTTCGCCACAAAGTGTATCCGAGTGTCCAGCACGGCCACCACACAGGATGTGATCGAGACGCTGGCAGAGAAGTTCAGACCTGACATGAGGATGCTGTCTTCTCCTAAATACTCCCTCTATGAGGTCCATGTCAGTGGCGAAGAGAGGAAACTGGACTTGGACGAGAAACCACTGGTCGTGCAGCTGAACTGGAACAAAGATGACAGAGAGGGCCGCTTCGTGCTCAAGAACGAGAACGACATCATGCCCAAGAGAGCACTGACAAATGGCCCTGAGAAGGAGAAGGAGGGGGTGATCCAAAACTTCAAAAGAACACTAGAGAACTCCAGGTTGGCTGCTGAGGTATATAAAGACATGCCAGAGACTAGTTTCACAAGGACCATTTCTAACCCCGAGGTGGTGATGAAAAGGAGACGACAACAGAAGCTGGAGAAGAGGATGCAGGAATTCCGCAGCGGAGATGGTCGGCCGGACTCAGGAGGGACTCTGAGGATCTACGCTGATAGTCTGAAGCCCAACATTCCCTACAAGACCATCCTGCTCTCAACTACTGATATGGCTGACTTTGCTGTAGCCGAGGCCTTGGAGAAATACGGTCTTGAGAAGGAAAACCCTAAAGATTACTGTATCGCCCAGGTGATTCATGTAAATGATAAACCAGTGAAGGAGACCATCCTAGATGATACAGATTGCCCTCTGCAGATCCTCAGAGACTGGACCAGTGATAAAGAGGCCTTAGTATTCCAGCTGAAAAAGCGTCCTCCAGACTACGTTCCAAGGAAAGGACGTAAGCCTGACACCAGGATGGGGCAGCATGGATCCATTCCTCCTGAGAAACTGCCCTACCTGGTTGAACTGAGCCCAGGGCGAGGGAGTCACTATGCCTACTACTACCGCCATCATGAAGATGGGTCAGACTCCAGGGATAAACCCAAACTCTACCGACTACAGCACAGCCTCACTGAGGTCGGATCTGAACGGAGTGAAGATGGAAGCATCCAGCTATTTGGGCCTGGGATTTTGCCTCACCACTGTGACCTGATGCACGCGGACGGATTGGTGACTGTGACCCCTGTCAGTTTGGACGCTGAGACGTTTGTGGATGGACAGCGGATCTCTGACACAACGGTTCTGCGCAGCGGCGTGACCGTCCAGTTCGGGGCCACTCACGTCTTCAAATTTGTAGACCCCAGCTATGACCACAGCATGTCCAAGAGAGACCCAGGGCCCATGATGAAGGGTAGACACAAATCAGGTGACTGTCCTCTCGGATTTCTAGTCTTAAACGCAGCCTTTACCGTGAGAATTGTTGGAAAAGAGGCTAGAAGAGTGACAGGGCAAGGAAGTGTCCCAGAGACGACCTTTGACCTTCACGGGGACGTTCATAGTGGCTCTGCTCTCCCTACAAGCAAGGTGTCACATCTGCCTGCTTCATTTGGATCTCTATGCATCTCAGGGAAGCTGGAGATGGAACGTTCAGGAAACAACAGTGAAAGAGGCCTGGTGAAGCCCATGATCAGAGGAGAACAGCAGGACTTTAGCAAACAGGACGGAAGGATGTTGTACGGCAGGACAGGAGCGGGGTCTCTGGAGCGGTGGGCGTCTGTAGACAGTGGTGTCAATCTGTCCTATCTTAACTGGTTCATCGAGCAACAGTTGTTTCCCTGCAGGTCCCAGGATGGCCCAGAGCTCACTCTGCCAGCCAGCATCGAGTTCAGGGAAAACTCTGAAGATGCCTTCCTGTCTGCCATCATTAACTACACCAACAGCTCAACGGTGCACTTCAAGCTGTCTCCCACCTACGTTCTGTACATGACCTGCCGTTATGTCATGTCCAGCCAATACCGGCCCGACATTAGCCCCTCCGAGCGCACGCACAAGGTCATCGCCATTGTCAATAAGATGGTGAGCATGATGGAAGGAGTTATCCAGGAGATTGCTGAAGGTGATCAGAAGCAGAAGAACATCGCCGGGGCTCTGGCCTTCTGGATGGCTAACGCCTCTGAGCTGCTGAACTTCATCAAGCAGGACAAGGATCTGAGTCGCATCACGCTAGACGCACAGGATGTCCTCGCTCATCTGGTTCAGATGGCTTTCAAGTACTTGGTGCATTGCCTGCAGTCAGATCTGAATAACTACATGCCAGCTTTCCTGGAAGATCCCGATGAACAGAACCCACAGAGGCCCAAGATAGACGACGTTCTGCACACTCTGACGGGCGCCATGTCCCTTCTGCGGCGGTGCCGAGTCAACGCGGCCCTCACCATCCAGCTGTTCTCGCAGCTCTTCCACTTCATCAATATGTGGCTCTTTAACAAGCTGGTGACGGAGGCCGACTCGGGCCTGTGCTCACACTACTGGGGTGCCATCCTACGACAGCAGCTCAGCCATATTGAGGCATGGGCTGAAAAACAGGGATTGGAGCTGGCTGCAGACTGTCACCTCAGCCGCATAGTCCAGGCAACGACCCTCCTCACCATGGACAAGTACTCCATGCAAGACGTGCAGAACATAAACAACACCTGCTTCAAGCTCAACTCTTTGCAGCTCAACGCTCTGCTGAGTAACTACCACTGCGCTCCCGATGAACCCTACATTCCTCCTGAGCTGATCGATCACGTGGTGGCTGTGGCCGAGAACACGGCGGACGAACTGGCCCGAAGCGATGGGCGGGAAGTACAGCTGGAAGAGGACCCTGACCTCCAGCTGCCTTTCCTACTGCCCGAGGACGGCTACTCGTGCGATGTGGTGCGGAACATACCCAACGGATTCCAAGAGTTCCTAGAGCCGCTTTGCCAGAGAGGTTTCTGTAGATTGATCCCTCATCCACGCTCTCCGGGAACTTGGACCATCTATTTCGAAGGAGCCGATTGCGACAGTCATTTCTCAGCTGACACATCAGAACTGCCAATGCGGAAGGAACCGGAAATTGTGACCGTGACTTTGAAGAAACACAATGGGATGGGCCTTAGTATTGTGGCAGCCAAGTTCAGTCTCGACTCCGGAGAGGAGGGCAGTACCATGTGGTTCTCTGTGGTCGGGAGGAAGGAGCCGATCACAGGTTCAAAAGAGAACAAGACTTTTGACTATAAGGATTTAGGACTTCGTGTTCACTTTCTAGTGGCTAGGGTGGCTTTTATAGACGTTACTCCATTTCATGCTCTGCGTGCCAGGGTTTCCAGCTTTGATCAAAGCAAGTTTAACGCAAGTTTCTTGAGGATAGGTCAGCTCATTTGCTCTCCCGCTGGGCCTGCGCTCCTGTCCTGTCCTGCATCAGTCGTGTTCAGAAGGCATGCAAACCACCCCGCCTCAGAACTCAAGCTTAGGGCTTCTCATATGTCTCTCACCGCAGAGAGGCTAAATTGTATGGTAAATGTAGGTGTTTTCCTCAAAACTCGTGGCGGTCCTGTATTGATCAGCATGGGTTTTTCATATATAGTGCTGAAGCCAGGGGGAAAAACAGTTCCAGCATGGGTGCCGGACAGGACAAACTTGGTATTTACATCAAGTCTGTTGTCAAAGGAGGTGCGGCAGACATGGATGGGCGTCTGGCTGCTGGAGATCAGTTGCTCAGCGTGGATGGACGAAGTTTGGTCGGTCTCTCGCAGGAGAGGTAATTCTGGAGCATTTAGACTTTTAATAATGATGTCTGTAGAATGGGATTTTAAAAAAATTGAAATGGACTTACAGATGTCTCTGTTTTGTAGGGCGGCAGAATTGATGACACGAACAGGCTCGGTTGTAACGCTCGAGGTGGCCAAACAGGGAGCCATTTACCATGGGCTGGCCACGCTCCTCAACCAGCCGTCCCCCATGATGCCCCGCGCATCAGACCGTGGACGTGGAGACAAGGGAAAGTTGAGACCAAAGAGTGAGGGCTTTGAGCTCTACAACAACTCTGTGCAGAATGGCTCTCCTGAGAGCCCCCAGGGCACGTGGGACACCTATCCTGAACCAAAGAAGGAGGACAGGTTGTTGAAGAATCGTGCAGACCACCGCTCCAGCCCAAATGTGGCTAACCAGGCTCAGAGTCCAGGTGGGAAGCCTGTTTACCCTGGAGCCCCAGGAAAGATCACGTCAGTCTCAACGGGAAACCTCTGCCCTGATGAGGAGCCTTCTCCACCCCGTCCAGAGGCGTATCCGATCCCCACTCAAACGTACCCAAGGGAGTACTTCACCTTCCCAGCCTCCAAATCTCAGGACAGGATGGGCCCTGGCCAGCCCTGGCAAAACAACGAACCGGAGCTTCTCCCCCCTATGGATAACCACTCTAACAACAGCATGGCTATGCAGCGGGTGGCGCGCTCTCAGGAGGAGCTGTGTGACATGCCGGGCGGGTACCCAGGTGAACGTCTGCGCCAGGAAGACCTGATGCACCTGCAGCAGCAGCAGCGTGAGGCTGAGTACCAGCGAGGTGGTGGCGAGCACTGGAACCACCAGACGTCCTCCTCGGTGGAGTCCAGCACCTCCAGCCAAGAGCACCTCAACTTTTCGTCGTCCTCCGGCTCTAGGTCCCAGGGCAACCACAAGAGTGGTCCTGGCCGCTGGAAAACCCCGATAGCACCCCACTCTGGCCCAGTGGGTGTCTCCCAACCTTCCCGCTCTGACCTTCCCCCTCCTCCCCCTCCTCCACCTGCACACTATGACTATGAGCCACAACCAGACATGCCGCTCCCTCCACCGCCATCTGTTTCACAGCAACAGGCGGTGGCCGCGGCCGATCGCAAGAAGCGCGAAGAGCAACAGCGCTGGTATGAGAAGGAAAAGGCCCGGCTCGAAGAGGAGCGAGAGAGGAAGAGAAGAGACCAGGAAAGGAAGTTGGTGCAGATTCGCAACCCTGCCGTCCCCGGCCCCGGCCCCGTCATGCACAACAGCCAGCACGGCCCACTGCCGCCCGCTCCTCAGCACCAACAGATGCCCCATCCACAGCCCCCCATGCCAGTGCAGGTACCCCAACCGTACCTTCCCCCAGTCCAGCCGCCCCAACCGCCGCCTCCACAACCAACTCGGCCCGATAAACTATCCAGCCTTCCCCGCCAACCACCACAGGACACGGTAATCCGTGACCTCTTGCCTCAGCAGCAGCCTCGCACCATCGAGAGACGCGACCTGCAATACATCACCATCAGCAAAGAGGAACTGTCCGCCAGTGACAGCCTGTCGCCCGACCCCTGGAAGAGGGACGCCCGCGAGAAACTAGAGAAACAGCAGCAGCTTCACATCGTGGACCTCCTGGACAAGGAGATCCAGGAGCTTCAGTCCAAGCCTGAGCGCACGGCCGAGGAGAACGACCGTCTGCGCAAACTCATGTTGGAATGGCAGTTTCAGAAGAGACTGCAGGACACATTGCTCGAAGCTAACTTTGATATCGCTCCATCTCTGAGGAGTTGGCAGCAGACTGCTGTTCCAGCAATCTCTGTACTAGACTTGCTACAGGACGAGGAGCGACGACGGAAACAGCAGTTGGAGGAAATCCGTAAGCGTGAGGCAGAAGAGCGAGTCAAACAGGAGGAGGAGAGACGCTGGAGAGAGGAGGAGAGAGCCAGACGAGAGACAGAGGAGAAGAGGAGACAGGAGGAAGAGTACTACACCCGCCTGGAGGCAGAGCGGCGCCGGCAGCACGAGGAAGCCGAGCGCCTAACAGGTCAGGTTAAGCTCTCGGCCACCCGGAAGTCCTACGGTGACCTTCCGCCCGCCCCAAAGCCCCAGCCGCCGCCAACCGCGCGCAAGCCCCGTCCCGTCTCAGATGGCATCTTTCTGTCCAACTCATTCCAGCTGCCCGCAGCGGCCAATGCCAACAGTACTGCTCTCAAGGCAGGGCAGCCCCCTCTCCTTCCCAACAAACCCAGCTTCATCCCATCAGCCAACTCGAAAGCGCCGTACAAGCAGTCAGTAGACCTCGTGATTCGCTGTGCGGTCCAAAATCAGTCCAAGTACTGTTGGTGTTGCCAGCCGTTTCATGTGTGTGTGATTTGCTTTGGGTTTGTCTTTATATGTATGCGTGTTTGCCATCATCATTTGCTTGGCTCCACCCACCCTCCCCTGCTTCCTCTCACATTGGGCCGCATGGAATCGTGGGATTCCACAGCCCCTCCCATCACCTTCTCTGAGAAGTCAATCAGTGAAACCGTCAACATGCATTTGGATTGCGGTGGTGCTCTTGCACCTCATTGCTTAGAAGCAAACTGGCGTTTCAATCTGGACCATCCCTTTGCCCTGACAGACACAAGGACACGATTTAATTCGTACACTGGAAACACAACAGGACTAGGATCAGGAGAAGTTTACAAGGACCCGCGAGAGAAGTGGACGAAAGGCGGCCCTGATCAGGAGAACACAATAGGCGGAGCTCCAGAAAATCTGACATTTAAGGAGCGCCAGAGACTCTTCTCACAGGGAAAAGAAGTGTCGAATAAAGTGAAAGCGTCCCGGAAGCTCATGGAACTGGAGAACGAACTGAACATAAAGCAGTAGCGAAGAGGACTAATTGCCAATACGTAATCCATCCCTGGAAAAAAAAAATACACAAAACACATCCAGCTATGGCTTCCCTGTCATTTCCAAACATTCTTTTTGGGTTTTATTGAATAACTGGACAATTAAGTATCATTTAGCTGCAATAAGAGAAGATATTCCATAAATTCCCTTGAAAGATATATTATA

Function

symbol description
afdn Enables actin filament binding activity and small GTPase binding activity. Involved in several processes, including bicellular tight junction assembly; establishment of endothelial intestinal barrier; and positive regulation of cell-cell adhesion mediated by cadherin. Located in several cellular components, including cell-cell contact zone; nuclear speck; and tight junction. Part of pore complex. Biomarker of Parkinson's disease and breast carcinoma.
mllt4 afadin

GO: NA

KEGG:

id description
K05702 AF6, MLLT4; afadin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03855238_03922931.mRNA True 6906 mRNA 0.53 46 3855238 3923120

Neighbor

gene id symbol gene type direction distance location
CI01000029_03830894_03838298 NA coding upstream 16913 3829607 ~ 3838325 (+)
CI01000029_03708374_03721140 NA coding upstream 134098 3708374 ~ 3721140 (+)
CI01000029_03689026_03697933 SLC22A2 coding upstream 157164 3689026 ~ 3698074 (+)
CI01000029_03649051_03684709 IGF2R coding upstream 170358 3649051 ~ 3684880 (+)
CI01000029_03640782_03646346 NA coding upstream 208874 3640782 ~ 3646364 (+)
CI01000029_03976118_03980629 SNX9, SNX9B coding downstream 52998 3976118 ~ 3980800 (+)
CI01000029_04007545_04011744 NA coding downstream 84425 4007545 ~ 4012008 (+)
CI01000029_04060211_04069639 NA coding downstream 135618 4058738 ~ 4070460 (+)
CI01000029_04076167_04079831 NA coding downstream 152676 4075796 ~ 4079964 (+)
CI01000029_04099307_04107542 LIN9 coding downstream 176187 4099307 ~ 4107547 (+)
G153491 NA non-coding upstream 123611 3698482 ~ 3731627 (+)
G153513 NA non-coding upstream 252404 3602590 ~ 3602834 (+)
G153509 NA non-coding upstream 260915 3588702 ~ 3594323 (+)
G153505 NA non-coding upstream 283168 3571841 ~ 3572070 (+)
G153504 NA non-coding upstream 283806 3571151 ~ 3571432 (+)
G153541 NA non-coding downstream 9985 3933105 ~ 3943762 (+)
G153555 NA non-coding downstream 69433 3992553 ~ 3994376 (+)
G153561 NA non-coding downstream 79204 4002324 ~ 4002561 (+)
G153562 NA non-coding downstream 79805 4002925 ~ 4003129 (+)
G153568 NA non-coding downstream 89567 4012687 ~ 4012998 (+)
G153475 NA other upstream 293234 3545125 ~ 3562004 (+)
G152451 NA other upstream 1092299 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2327339 1526754 ~ 1527899 (+)
G151495 NA other upstream 3483316 366541 ~ 371922 (+)
G151415 NA other upstream 3629993 170521 ~ 225245 (+)
G153790 NA other downstream 810469 4733589 ~ 4740107 (+)
G154587 NA other downstream 1347900 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1534121 5461497 ~ 5470346 (+)
G155079 NA other downstream 2359565 6282685 ~ 6288398 (+)
G155083 NA other downstream 2508415 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00003703 NA coding CM030121.1 CM030121.1 15255056 ~ 15289576 (+)