CI01000029_04007545_04011744


Basic Information

Item Value
gene id CI01000029_04007545_04011744
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 4007545 ~ 4012008 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_04007545_04011744.mRNA
GTGTCTCAAATGGCACAAATACTCGGAACCGCAGCCTCCGATCCATAAAACACCTGCCACATCCTGTGGATGTTCTAATGTTTCAAAAACAGAGAGGAATGAAGATGAACAAAAAGTTAGAAAGATGCTCTGTCCTTCCTGGCTTTTGGCTGCAGCAGTCTTGTGTTTCCACAGCCCATATGTAGACGGCCGCTGCTTGGATTTGATAGACTGCATGGGCCTTAAATCTAATGAGCAAAAATTGCAGTGTATCAGGCAGTGCAGATCTGCACAAGAATCCTCCAATTACGGACGAGTGTCTTCATCTGAACAGCTGAACAGTGAAGAAGAGGTTGAGGAAGAGAGTCTCAGTTTGGCCCTGCTCTTATCAGCTCTGTCTCCTGACTCGATCGAGCTTCAAGACCCCACTGGAGAAACCCCTCACAATGATGAGAGGAGGTCTTACTCCATGGAGCACTTCCGCTGGGGCAAACCCATGGGCCGCAAGCGTCGACCTGTCAAAGTCTTCACTAATGGCGCTCTGGAGGAGGAGCCGGTGGAACCAGAGGAGTTGGTGGAAAGCATCCGGGTGGAGCGAGGGCAGGGAGACAAGCTCCATGTTCAAAACAGGAACAATGTAAAGAACAACGGGAAGTATCGCATGACCCATTTCCGCTGGAACGCACCACCTGACAAGCGCTACGGAGGCTTCATGAGGCCCTTTTCAGATCAATCCAACAAGCCACTGCTCACACTCATACGAAACGTCATTGTTAAAGACGGACAGCCGTTCAGAGATTAAGAGAGGAGAGAATATTTGGTGTCAAAACATTTAAATGTGTCCTTAATATCGGCTACCTTATTTAAAAAAAAAAAGAATTTTCCTCTGAACCAAAAGTACAGGGCATGAAATGTTAGTGTCCTGTGAAAAAAAAAAAAATGAAATACTCATTACTTGATATTCACAGTTCATTTAGACACACGGCACTGTACTGATCATCTCTGGGATTTAAAAAGAAAGGATATTCAGAAATGCTTTACTGTAATATACTGTACATGAACTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_04007545_04011744.mRNA True 1045 mRNA 0.45 3 4007545 4012008

Neighbor

gene id symbol gene type direction distance location
CI01000029_03976118_03980629 SNX9, SNX9B coding upstream 26745 3976118 ~ 3980800 (+)
CI01000029_03855238_03922931 MLLT4, AFDN coding upstream 84425 3855238 ~ 3923120 (+)
CI01000029_03830894_03838298 NA coding upstream 169220 3829607 ~ 3838325 (+)
CI01000029_03708374_03721140 NA coding upstream 286405 3708374 ~ 3721140 (+)
CI01000029_03689026_03697933 SLC22A2 coding upstream 309471 3689026 ~ 3698074 (+)
CI01000029_04060211_04069639 NA coding downstream 46730 4058738 ~ 4070460 (+)
CI01000029_04076167_04079831 NA coding downstream 63788 4075796 ~ 4079964 (+)
CI01000029_04099307_04107542 LIN9 coding downstream 87299 4099307 ~ 4107547 (+)
CI01000029_04143243_04143794 NA coding downstream 131235 4143243 ~ 4144051 (+)
CI01000029_04213048_04215977 NA coding downstream 201040 4213048 ~ 4216310 (+)
G153562 NA non-coding upstream 4416 4002925 ~ 4003129 (+)
G153561 NA non-coding upstream 4984 4002324 ~ 4002561 (+)
G153555 NA non-coding upstream 13169 3992553 ~ 3994376 (+)
G153492 NA non-coding upstream 23045 3750312 ~ 3984500 (+)
G153541 NA non-coding upstream 63783 3933105 ~ 3943762 (+)
G153568 NA non-coding downstream 679 4012687 ~ 4012998 (+)
G153589 NA non-coding downstream 61185 4073193 ~ 4073634 (+)
G153598 NA non-coding downstream 106523 4118531 ~ 4118925 (+)
G153600 NA non-coding downstream 107877 4119885 ~ 4120221 (+)
G153602 NA non-coding downstream 112751 4124759 ~ 4135507 (+)
G153475 NA other upstream 445541 3545125 ~ 3562004 (+)
G152451 NA other upstream 1244606 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2479646 1526754 ~ 1527899 (+)
G151495 NA other upstream 3635623 366541 ~ 371922 (+)
G151415 NA other upstream 3782300 170521 ~ 225245 (+)
G153790 NA other downstream 721581 4733589 ~ 4740107 (+)
G154587 NA other downstream 1259012 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1445233 5461497 ~ 5470346 (+)
G155079 NA other downstream 2270677 6282685 ~ 6288398 (+)
G155083 NA other downstream 2419527 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G333842 LOC100136772 unknown NC_048568.1 CM023222.3 23387061 ~ 23388570 (-)
striped catfish (Pangasianodon hypophthalmus) G319087 NA non-coding NC_047615.1 CM018561.1 12627675 ~ 12627890 (+)