G153492


Basic Information

Item Value
gene id G153492
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3750312 ~ 3984500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174314
GGAGGCTCCCGTGAGCTGGGCTTGCTGTCACACCGCTCGATGTTGCAATACTCCCACCGAACCGTGGGATCTGTGGTGTAGCACCAAGGGGCTCTGTCACCATCTGGATTCCTGCACAGGTTCCTCCTCAGATCTCTGCATGATTGGTGAAATCAGAGGGGAAATCAGTGGACTCCAAATTTGCAACAGTTTAAGATTCAGTGTAGTATCTTACGCTTTAGGGAAATTCTGAGGTGTTTTGGAATGTCGATGAGGTTCCATGGATGTCCAGAACTGGCATTTCTTTCCACTGATGGTCTCTGACATGGCACCACGGTAGGAGGTTCCATCACCTTCATAACATGCCTCACCCTCAGGGATCACCGGCTCCTCTAGGAATCACATATTTGTTATGCATGGCTCTTTCACCAGTTCTAGGGGCAAATGATGTAAAATACAAAAAAAGGACACCATAATCTACATTTAATGTGATATGGTTTTGTAATGACTCCTTCAAAACAGACCAGGTCTAGGTTGATCTCCACAACTTGGCACACTGCAGTACTCCCAGCGGGTCCCGGGATCTGTGGTGTAACACCATGGACTTCTTTCATTATCAGGGTTTCTGCAGTAGTTCTTATCAAGGCCTCTGGGATGAAAACAAACTTTAGTTGCATTCCCTGTGTAGTCACTATTCTGTATATGTATGGCATACTGGGGCAAGCAAAATTTCATACAGTAGCTTTGCTCTAAAGAATAAGACTTTGAAGAAGTGTGTCTGTTTGTTTCTTCTGGTTCAACTGTGTCAAATCATGCTCCTGGAGGGCCCTGTCCTGCAGATTTCAGCTCCAACACACTTGCCTGGAAGTTTCCAGCAATCCTAAAGACCTTTATTAGCTGGTTCATGTGTGCTAAAATGGGGTTGGAGCTCCTGAAGAGCCTGGTCCTGCAGAGATTAGTTCCAATCCTGATCAAACACTTGCCTGTTATTTTTTAAGTAATCTTGAACACCTTGATTAGCTGCTCTGAACAAAGGTGGTCCTCCATGTGTAGGGCTTGACACCATTGGATAATTAATCAAAACCTGAATGTCCCTCAAAACCAGTTTATCCAAACCATCATGTTGATGCTTACTTGCATGGGTAGTTCTCTGAAGTTCTGGAATGAGTGTGGGGACTTTGGGATGCCCAGTCTTGGCAAGTTTTTCCTGAGACGGTTACCGCAATGGTGCCCCTGTAGGAGCTACCTTCTCCACTTGCACAGGTAAGCTCTGGTACAATTGTGGGTGGTTCAGTTGCTACAAGAAAACATTGACCAATTAATGACAAACTAACCATTTGACACAAAACTTTGATTGACACAAAAGATTGACAAGAACATTGCTTACCGCATCGTGGAATGGAGCACGATTCCCAACGTTTGGATGGACTAGTGGTGAAGCACCAGGGCCTGGGCTCTCCATCGGGGTTCCTGCAATAGTTCTCTTCCAAGTACTTATCAGGAAGACTACAAAAGACAGACCATAGTTAAAATATGCACAAAATAGACTATATCCTCTTTGTGCTATAAATGATAATGTCTCACGCTGAAGGGATGTAACCGTGGTTGTGGGGTTTTTGAGAGTCCCAGCGTTGGCAGGTAAATCCACTCATAGTGGTGGAGATCTTGCCTCTGTAGTTTTCTCCACTGCACTGCATACATTCCTCTGGAGATATTAAAGAGCAGATTCAAGGGACAAATTTCAAACTGTTTTTGCACTCTTGTACATCCCTTCAAAAGGTTGCTCCAAATGAAAGTGAGCAACTGAATCCCTTCAAAAAGGGCTTTTCCACAAGGCCGTTATTGAAATGTACACATGGACGTTTCAAGCAACTCATTTTCTCCTTTATGATTACATGATTCTGTGTGGCACATCTTCTCTCCATTTTAAAGCCTAGGCTAATTATCATTGTTGTGATATTCCCATGGATTTAAATCCAGTTTTATCAAACACTGGACAAAGAGACCATATGCAAGTTGAAATACTGTAAATTTGGATTTATAGATGTTCAGAATATAGATGGATAAAGGATAAAGTGGTATTAATACTAGTAATGCTCTGCTCTCTTCAGAGTGTTCACTTCAATTGCACTCCAGAGTAAGCAGGGCATAGTGAGGTTAACTTTTGCATGAGATTCCCACATTAGTATGATAGCCCACCAAGGTCTAGCAATTTCTTTGCTAAATGTACCTGTGCAGTCTTGGATATCGCAGTGCTCCCATCGTTTCTCTGGATCTGTGGTGTAGCACCAGGGACCTCCCTTGTCTCCATCCGGGTTTCGACAAAAGTTGGACTCCAAGTCAGCTTTTGGATGTGTCTTTGGCGTTACGCTGTGGGAAGTTACTATTGAGGTTAATTAGCTGGCTTAACCACTGTAGTTTCTGTATTCTGTAAGAAAGCTGTTTTCTTTTTTTACAGAATCACAAATGAAAAATTAAGACATATACTTTGGCACATGGGGGAAAGATGCCTCCCATCTCTGACACATTTTTCCTGATTTTGTCTTGGATTTTGTCCCTCTGTAGTCCATGCCAATGCCATTCACACATTCCAGTAAGTACTCCTTTTTCCCCCCATAAGACACATTGACATTACAGTTATTTTCTCTCTCCCCAAAGCCAAATTACAAACAGAGATTGTGTTCAGTTTGATGCTTCCACCTCAGTGCAATTATCACCAATTTCTTATCCCGTAAAGATGAAATTATACTCCGTCAGGTGCATGTTTTCCAGTTGTTCATATATTTTATATGTATAGCAGTGTTTGCAAGTCTTTTGCACACAAAATGACAAAATTGAGATTATGATTTAATAAATACTGATTTGTATGCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU174314 True 2851 lncRNA 0.42 2 3750312 3984500

Neighbor

gene id symbol gene type direction distance location
CI01000029_03708374_03721140 NA coding upstream 29172 3708374 ~ 3721140 (+)
CI01000029_03689026_03697933 SLC22A2 coding upstream 52238 3689026 ~ 3698074 (+)
CI01000029_03649051_03684709 IGF2R coding upstream 65432 3649051 ~ 3684880 (+)
CI01000029_03640782_03646346 NA coding upstream 103948 3640782 ~ 3646364 (+)
CI01000029_03511828_03527110 GOPC coding upstream 221574 3511828 ~ 3528842 (+)
CI01000029_04007545_04011744 NA coding downstream 23045 4007545 ~ 4012008 (+)
CI01000029_04060211_04069639 NA coding downstream 74238 4058738 ~ 4070460 (+)
CI01000029_04076167_04079831 NA coding downstream 91296 4075796 ~ 4079964 (+)
CI01000029_04099307_04107542 LIN9 coding downstream 114807 4099307 ~ 4107547 (+)
CI01000029_04143243_04143794 NA coding downstream 158743 4143243 ~ 4144051 (+)
G153491 NA non-coding upstream 18685 3698482 ~ 3731627 (+)
G153513 NA non-coding upstream 147478 3602590 ~ 3602834 (+)
G153509 NA non-coding upstream 155989 3588702 ~ 3594323 (+)
G153505 NA non-coding upstream 178242 3571841 ~ 3572070 (+)
G153504 NA non-coding upstream 178880 3571151 ~ 3571432 (+)
G153555 NA non-coding downstream 8053 3992553 ~ 3994376 (+)
G153561 NA non-coding downstream 17824 4002324 ~ 4002561 (+)
G153562 NA non-coding downstream 18425 4002925 ~ 4003129 (+)
G153568 NA non-coding downstream 28187 4012687 ~ 4012998 (+)
G153589 NA non-coding downstream 88693 4073193 ~ 4073634 (+)
G153475 NA other upstream 188308 3545125 ~ 3562004 (+)
G152451 NA other upstream 987373 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2222413 1526754 ~ 1527899 (+)
G151495 NA other upstream 3378390 366541 ~ 371922 (+)
G151415 NA other upstream 3525067 170521 ~ 225245 (+)
G153790 NA other downstream 749089 4733589 ~ 4740107 (+)
G154587 NA other downstream 1286520 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1472741 5461497 ~ 5470346 (+)
G155079 NA other downstream 2298185 6282685 ~ 6288398 (+)
G155083 NA other downstream 2447035 6431535 ~ 6490294 (+)

Expression


Co-expression Network