G153509


Basic Information

Item Value
gene id G153509
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3588702 ~ 3594323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU174335
GTTTTATTTCCATTTTTGCTTCATAGGATGAAGATACACAACTGATAAAAACAGATAACACCTCATTTTCCTCAATGCACTGGAAAAATACTTTCAAAGGTAATATATTACATGTGATACATTCACATACATCGTGGTGTGATGTCAACCTAAGCTGACGATGACTAAGAGTGGTTCTTAAAACAGTACATATAAAAGAATCAATGTTTTTGATGCATTTAGTCATGCTGTTTGATCCTACATGCTGAAATAAATCAATTTAATCTCTGATGGTGTTGATTTTGAGGTTTTGAAGGTTGCAGCAAGTTTATAATAGTCTTTTGTTTCCTTCTTAAGAGCCCAAAGCAAGCTTGAATAAATGTCAAGATGTGTTTGGTATAAAAAGATGTCACTATACTCAAGTTTGTATAATCGATTGCATTTGCAAGTTGCCTCTAAAACACTTAAAGTGTTAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCACCGTCATGTCGTTCCAAACCTGTAAGACTTTCGTTCATCTTCGGAACACAAATGAAGTTATTTCTGTCCCTCCATTGATAGCTACGCAATTACCACTTTGACGCTTCAAAAAGTAAATTTGAGATCGTAAAACTAATCCATATGAATTGAGAGGTTTAGTCCAAATTTTCTGAGGAGACACAATCATTTTGATGAACAGATTGAATTTGGGCTTTTATCCACATATAAACATAGAAGCTCAACCGAAACTACTTGACGTGCAAGACTCGTGTGGAAGCTCAAACGTGCAGCACAGCTGTCAATGGAGGGACAGATTTCTCTCAGATTTCATTAAAAAGATATTCATTTGTGTTCCAAAAATAAATGAAAGTCTTATGGGTTTGGAACGACATGAGGGTGAGTAAACGATGACGGTGAACTATCCCTTTAAGGGCAAACAAAAAAAGTGTATCACCCGGTTTTATTTCGATTTTTTCTTCAAAGGATGAAGATACACAACTGATAAAAACAGATAACACCTCATATTCCTCAATGCACTGGAAAAATACTTTTCAAAGGTAATATATTACATGTTATACATTCAAATACATCGTGGTGAGACGTCAACCAAAGCTGACGGCGACTAAAAGTGGTTCTTAAAAAAGTACAAATGAAAGAATCAATATTTCTGATGCATATCATCATGCTGTTTGATCCTACATGTAGCACTGGACACACTAAGACACATAAAGTATATACAGTACGGCTTAATAGTGTTTGTATCTACTTCCAGCCGAACCCACACCACGCCTCAAAAAAATGAAAAGCCAAACCAGTTGTTCCCTTTCGCCGTGTGTCCAGATACAACAAAACGCCTCTTTTATGAAATCCAGGGCGCTCGCTCGGTCAAACGGCACATAGCGCCGTTGTCTGTGCGTCTGCTAAGTTCCACAACAGTTGTTGATGACAGGTGCTGAAAGCAATATAGATAGAGTCAAGTGGCTTCAAATAGCCTTTCTCTGTCTTCAGCGATGATAGGGAATGCTGCTCTCTCTCATCAGAAACTCTCATTTCTGGTCAAAAGAAAAGTCTTCATGTAGCCAGTCCGTCTTTTCTCCAAGTCGGCTCTCAAATGTCCCCTTGAAGTAACATTTGTCCTTTTTTAAATCTCATTTTGGGTCCGTTTTGCCGAGAGCGCTGAGGGTCGGGGGAGGGAAGGGGCGAGAGCAGCTGCTAGTCACACCACTACAGTATGTTTGCTCCACTTTACTGAGAGATTTTTGCACTCATCCGAAGGGTTCTTATCCACTTTCAGCTTAGGATGGTCCCGCTGCAGAGGGTGTAGCGCCGAGCTGTATCCATGTTCAGACTCATATCAGAGCTCGCCGCTGTGAAAGCTCCGGTCCACGCCGAGCTGCCTGGCTCGCTCTTGCTGATATCGCACGGCGAGGTTCCAGGTGCGGGTACCGTGGCTGGGGGAAGTCTATGCGGCCGCACCGAGGGCACGAGCAGAGAGCTGTAACGGGGGTCAAAGTGCGTTCCGTACATATCGTGCATGGAGGGCCGGGGGTAAGCGGATCCCTGGGTGCCGATGGCTCCGCTGAGTGAGTAAGGGTGATGGTGGTGAGAGGGGTGCCAGGGCTCCGGGGTGGCTTGGTGGAGGTGACTGTGTAGAGACGCGGTGGAATAAGGGTCCGCTGAGAAGGGGAGGTCTGTGTGGGAGGAACCCAGGGCGCTGCTGAGAGATGCTGAGACCGACGGCTGATACGCGCTGTTCCAGAACGACGGAGGGAAGCTTCTCTGGCTCATAGGGAATGAGCCTTCTCTCCAGGACGATGTACCTCTCGCGGTCTTGCTGTTGGTGGATCCAGGTGCGTAACTATTAGACTGACTCAAAGCTCGACTGAAATGTTCATCCACCACTGAACTGATGTCCCCTTGGAAATACGTGAAAAGCACACATCTGGAGCTGATGTACTCCGCCTCCGGTGGGTGATCTTTCTCTCGGGCGCAGTCCTCCTCTTTTATGGGTGGCCCGGAGAGGTTGGAAAAGGAAGAGCTGCTTCCGCTGACGGTTTCTGGTGATTCTTGCATTTTCGAGTAAAATGCCAATTTCTGATGGTGATAAGGTGTGTATGCTGCGGCAAAATAAGGCTGAGGTGGACCATAAACTTGATACATGACATCCAAGCAGCTCATGGCGAAGACAGCTGTTATATCACGTATAAAAACTTATTAGTGGAATGAGAGGACGCTTCATTTGAAATAAAGCGCTGGTTCAGTGTCTACAGACAGAAAATGAAGCTCCGCGTCGATTGCGGCTGAAGCGCACTGAGCACCTTTTATGTTCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU174335 True 2823 lncRNA 0.44 4 3588702 3594323

Neighbor

gene id symbol gene type direction distance location
CI01000029_03511828_03527110 GOPC coding upstream 59964 3511828 ~ 3528842 (+)
CI01000029_03499444_03499713 NA coding upstream 88516 3499193 ~ 3500186 (+)
CI01000029_03324084_03378615 CEP85L coding upstream 210087 3324084 ~ 3378615 (+)
CI01000029_03291762_03308373 NA coding upstream 279909 3291762 ~ 3308793 (+)
CI01000029_03266557_03286137 NA coding upstream 302557 3266483 ~ 3286145 (+)
CI01000029_03640782_03646346 NA coding downstream 46459 3640782 ~ 3646364 (+)
CI01000029_03649051_03684709 IGF2R coding downstream 54728 3649051 ~ 3684880 (+)
CI01000029_03689026_03697933 SLC22A2 coding downstream 94703 3689026 ~ 3698074 (+)
CI01000029_03708374_03721140 NA coding downstream 114051 3708374 ~ 3721140 (+)
CI01000029_03830894_03838298 NA coding downstream 235284 3829607 ~ 3838325 (+)
G153505 NA non-coding upstream 16632 3571841 ~ 3572070 (+)
G153504 NA non-coding upstream 17270 3571151 ~ 3571432 (+)
G153466 NA non-coding upstream 92180 3496291 ~ 3496522 (+)
G153461 NA non-coding upstream 104323 3483944 ~ 3484379 (+)
G153513 NA non-coding downstream 8267 3602590 ~ 3602834 (+)
G153491 NA non-coding downstream 104159 3698482 ~ 3731627 (+)
G153492 NA non-coding downstream 155989 3750312 ~ 3984500 (+)
G153541 NA non-coding downstream 338782 3933105 ~ 3943762 (+)
G153555 NA non-coding downstream 398230 3992553 ~ 3994376 (+)
G153475 NA other upstream 26698 3545125 ~ 3562004 (+)
G152451 NA other upstream 825763 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2060803 1526754 ~ 1527899 (+)
G151495 NA other upstream 3216780 366541 ~ 371922 (+)
G151415 NA other upstream 3363457 170521 ~ 225245 (+)
G153790 NA other downstream 1139266 4733589 ~ 4740107 (+)
G154587 NA other downstream 1676697 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1862918 5461497 ~ 5470346 (+)
G155079 NA other downstream 2688362 6282685 ~ 6288398 (+)
G155083 NA other downstream 2837212 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G684878 NA non-coding NC_048572.1 CM023226.2 21499512 ~ 21500950 (+)