CI01000029_03640782_03646346


Basic Information

Item Value
gene id CI01000029_03640782_03646346
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 3640782 ~ 3646364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000029_03640782_03646346.mRNA
CTGAAGCTGACTCACATTGACTGCAGTCCTGAGGACACACTGATACACTTTCAGGGCCAATATATGACCATCTGTGAGCTGGACTACAACATTCTTCAAGTTGAAGTTCAAAATGCTCTGAAATCAAAAGTTTCTGTTCAAGTTGGAGATGTTTGCCTGGTAGAAGATGCCGTGTCTGGTCGCTGGTACAGAGGAAGAGTCCAAAACATACAGAACAATTTATTCCACATGTTTTTGCTAGACCTTGGAGATGTGTTGATTGTTGGGCCCAGCCAGTTGTCCTCCATATCCGACACACTCCTAATGCTCCCACCAAAGATTGTCTGCGGTTTCTTTGCCAATATACTGCCAATCCAGAACCGATGGGACAGTTTGACAGAGAGTTATTTCTCTTCCTTGATAGGCAGCCAGATCAAAGGATACATCCACGCCCGTCTGCCGTACCATGTCCTCATTCTTGAAGTTCCAGACATTAATAGTGACTTGTTCAAAATGAGGCTTGGGAGACATGTGGACACTAGGACATTTCTGCTACTGGTTGAGATTCTTATTGAGGAACCAGTTCTACAAAACAATGAATCTGTCCCAGATCTCTTGATTGAAAAGCAAATAGGGCAAGAATGTTGTCTCAAATCCTCAAGCCTGGTGGGCTTTGAAGAAATTCTGTCACTTAATGGCCCAAAGCTGAAAGTTGGTCAAAAAGTAAGAGTTGTTGTAGCCGCAGCCGTGAATCCTGGATTATTTTACTGTCGACTGTCATCCATGGACAAGGACCTGCAAGAAATGTCAGACAAATTAGCACTTGCATGTGAATCAGACAGTGGTTACCCAAGTAATAAACCACTTGAAAATCTTGGCTTGCTCTGTGCAGTCAAAGGGAAAGATGAAAAATGGCACCGAGGTTTTGTGCAATGTCTCCCCCTCAACTCTCAGGTCCAAGTTGTGTTTGTCGACAGTGGCTATTGTGAATCGGTGAAAGTTGAAAACATCCTTCAGCTACCATCAGAATTCATCTCAATACCAATCATGGCATTCCCATGTTCACTTTCATGCTTGGAAGAACAAGATGAGACCATTAAAAACCAACAACTAGTGGCTCTGAAGACCGGGTTGTTGGGGAAAGCTTTGGAGGTTGCAATCGATGACTTTTGCAAAGATCAGAACTTCTACTTGGTCACATTGAGCACTGTTGAGAAACACTCAGTGGAGCAACCCGAAGTTAAACTACTTGGAAGTGAAGTTTTTGACAGCAAGTCCAACTTTCCCCACAATGTCCTTTCAAAGATGTATGCTACAGAGATGAAAGCGGTCCAGACTTCTGGTTCAGTTCCTAGTGAACCAATACCTGATGGTTCTTTTTTCGAGGGCTATGTGGTGCATGTCCAGAGTCCAAAACATTTCTGGATGAGGACCAAAGAACAAAATCCTAATTTTGAAAACATGACGAAAGAAATGACAGATTACTTCAGCAAAATACAGTTGAAAGAGGAGGTTTTTGAAGACCCAGTGCCTGGTGCGCTTTGCTGTGCAATGTATGAAAAAGACATGCATTACTACAGGGCCATTGTAGTAGATACTTTGGAAAATGGAGCTGAGGTGTTTTTCATTGACTATGGAAACACTGAAAAGGTGCCAAGCATATTAATTAAGAAGCTCCCCCAGAAGTTTGCCATTCATCCAGAATTTGCACTGAAGTGTGCTTTAGCGCATGTGGCTCCATTTGAGGACATCTGGACAACCACAGCATCCAACTTCTTCAGGCAAGTCACATCAAACAAAACCTTGGTGGTTCATGTCATTCACAGAAAAAATGCTAAATATGTTGTTGATCTTTTTGAGAGAGGTGCTGAAAATAGCAGTAGCATTGCGACCATCATGACAACAGCAAAAATGGCCCTGGATTGGAGATACAACCCGGCATTAGCATCTGTTGAACCGGAGAAGTCATGTAAAGACGAGGGAAATGCTCTGAACAAGAAAAAAAATAGAAAGGACCCTCATGTGGTGACCTTTTGCAAAGTCACGTCTTCTACAACCAATCCAAATCAGTTGAAACCAGAGTGTGAACAACAGAATGACCTTGAAAGACATACTCCCAATGAGACATCAAAACTGAAGGTCGTTTCTGCTGAGACCATCAAATCGATGCATTTTAAACCTGGATCTGAAGTAAGTGTCATATGCTCACATATAAATTCTCCATCCGATTTTTGGTGCCAAAATGAGAGCACAAAAGTTGATCTGTACAAAATGATGGAAGAGATGCAGGCATTTTACCAAACGCACACAGTTGCACTTGAGATGCCAGCAGTATGCTGTGCTGTAAAGTCTCCAATGAATAACCGATGGCATAGAGCATGCATATTAGGAGAAAACAATGAGGAACTCTCCTTGATCCTGGTCGACTTTGGCATAATTATCCAGGAAAGGATGCAAAACATCCAAGCTCTTGCACCACAGTTCTTTGAACTTCATATACAAGCATTTAGATGTAGTTTGGACTTGATTGAACCTGTTGGAGGAAGGTCTTGGAGTTCAGAAGCATGTAGTTTGTTCAGGGATTTTGTGTCTGAGGATTCGCCCAGTATATGCAGAGTTCATTCCCAGCTTTATGAGCAAGGAAAAGGTCTCCTTAATGTGGTCACCATTCATAAACCTCTTCAACAGGCTACCAGATACCTTGTAGAGAAAGGTGTTGCGGTTGAAATGCAAACTCCAAAGCAGCTAATTTCATCAATGTTCCCTCGCTCCTTCATTTACTCGTCTTTCAACATGAGCTCTGGAAGCGAAGAACTGGTGCATGTTACTAATGTTTGCAGTCCTTGGGAAATCTATCTTCAGCTCGACAGGAATACAGAGATCCTTGATACGCTGATGGAGAGAGTTGCTGAAGAAAGTCAGCTCTTTACTACGACATCTGACGACTGCAGCGGTTATGTTTGCCTGGCCAAATATTTCTGTGACGGCAAGTGGTACAGGGCGCTGACACACCCTGTCCAATCCCATCAGCATGTGAGTGTGTTCTTTGTCGATTATGGTGATAAGCAAATTTCTGAGAAAACAAATGTTATGCCAATTCCCAAAACGGCGGTTGATTTATTGATGACACCAATGCAGGCTCTGAGATGCAGCCTTTCGAATGTTCCAGAGGGGGAACATTTGCCAGAAGTCAACACGTGGCTCGAGACTGACATCCTCAACAAATCTTTCCAGGCCAAGTTTATGTCAAGGGACAAAAACGGACATTTTGTTTGTGATCTTTATGATGGAAATGTGCACATCAATGAAAAAGTCAGAGAGCTCATGGCAACTTACAGTGTGGCAGAACGTAAGCTGATTGTCAGCAATCCTACTTTAGATTCGAAAGTGGATATCTGCGTTTTAAATGGTAAAGTGAACTCCAATGAGAGGGGACATGATAAAACCAAACCGGGCAGTAAGCAAACCTCAAAACCCATAAAACCTCCCAAAAAGCAACATAAAGTACCAATAAAAGTGGAACAACAGGACAAAACCTGTTCTCTTAAAGTTGTGCCGTCACATCAGAACTTGCCAAAACTTTGTGATCTTCCTGATGTCAAAATGAAACCAGGTTTTAGAGGCGTGGGCTTCATCTCTCATTGCAATTCTGTTAGAAGCTTTTTTATCCAGATGGAAGATGATGAAACAAACATCCTTCAAATGGGTGAAGAACTAAACGGCACTGTCTTCAAGGATAACATGAAAAATGTGGAAACCAAAGTAAAAGTAGGAGACCTTGTTGCCGCTGAGTATGAAGAAGATTTGGCTTTGTACAGAGCTGTTGTCACTAACGTTTCAAACTGTGGACACTTAGCAGTTGAGTTCATTGATTATGGCAATCCTGCAACTGTTGACAGGAAGAATGTTCACATGCTAACCAATTCATTTTTGACTCAACCCAGATTGAGCACTCCGTGCACACTTGCAAACCCTTACTCATTTGAAAACGATGACTCTTTTATCAAGGAAGCAGTTGGTAAGCCTTTAATGGTTGAATTCATTCGAAAGCTCGATAATTCATGGGAAGTGAGCATTAAGATTGAGAATGGCCACATGCATGGGAACTCAAAGTATGATGGTGACCAAAGCAAAGATGTAGTCTTGACTAGTCAAAACAAATTCCCAAAAGTGTCCCAGAGTGAAACCCAAACCAATTCTCATGTCCACAAGACTAAATCTGTTAAAACCTTCCAGCAAAAGACTGAGTCATACACACAACAACGCAAATGTGAACTCAAAAAGAATCATGCAGACGTTAGAACCTTCCAGCAAAAGACAAAGTCAAACACTCAACGCAAATGTGAAGATGGAAAAAATCAGACAGTTGCAGCAAAGCCAATAAAGAAAGCAGGCGTTTACTTCCCGACTTATGTCTTTTGGAATAGAAAGTACAAGAAGAAGCAAAGTAACTTAAAGCCTAAGGCCGTGGTTCTTGCCAAACTACCATGTGACACAAGCATTTCAGTGACTAAAACTTCAAGAATGTTGCAGGAAAATGTTTCTACATTTAAAGCAAATGATCATGAAACCTCCAAGTCACCTGCTAGCATTGTTCTGCCAGATGTGAAAGACATTGAGGCAGTGAAAAGTCCTGATGAGCTGCTTGTTGTTGTTAATGACCATCCTCCCTTCCCAGACACTTCTTCAAAGATCAGTTTGGATCGACCACAGACCCTATTCCAGGCCCCTGTCCAAATGAACTTTGAATATAAAGGGTTTGCAGCAGCAGTCACAACCCCATCTGAATTTTATGTCATTCTTGAGGACTTGCTTTTGGTTGTAGATATGGTCTCTTCCATTCTTGAGAACCTTCCCAAAGTGTTGGTGTCATTACCAGAGGTTGATTTTGTTCCTGGAGCAAGCTGTTTGGTGAAATCGGCAGAGAAGAAAAAATGGTGCAGGGCCGGGATCGTGCAGTGCGATTCCACTTCTGTGCTCATAAACTTGGTTGACTATGGGCAGTATTCAGTGTTGTCTCGACGGGATGTCTGCCAGCTAAAAAAACTTCCAGAGGAGCTCGGTAGATTACCTAAAGTCACCTATCATTGTTTACTGAGGGGAGTGAAACCCACTGGCCAGGACTGGTCTGATGATGCCATCGTTTTCTTCCAGAACTGTATGTGTCGTGGGAATCTACAGATACGTTTCAGACAGCATGTTTCTGAGACACAATGGGAGGTTGACATTATCACAGGAAAGCGAAATCTCGCAAAAGAGTTAGTAGATGCTGGTCATGCCATGTATATCGATAATATGCTTGGAATCAGGTTTCAGCAAGAGCAAGGACCCAATAGAGAGTCTAAACAACAAGACGTCTCCAGCATTGTGAATGTTTTATCCATGATAACTGAGCACACATGCAAAGCCAAACACATGCAAAGCCAGCAGGTCTTTTCAGATGAATCCATGTTTGATCAAAAGTCATCACAAGATTCTGTTGTGGAGCAAGACACTTCATACCCTTTGAACAGCGGTGGTGATCATCTTGGAACTGTGAGGAGGACAACGCTTAGTCCACCATCAGGTATCAAACAATGTGAGTGAGAATGTATTAATTAGAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000029_03640782_03646346.mRNA True 5583 mRNA 0.42 1 3640782 3646364

Neighbor

gene id symbol gene type direction distance location
CI01000029_03511828_03527110 GOPC coding upstream 112044 3511828 ~ 3528842 (+)
CI01000029_03499444_03499713 NA coding upstream 140596 3499193 ~ 3500186 (+)
CI01000029_03324084_03378615 CEP85L coding upstream 262167 3324084 ~ 3378615 (+)
CI01000029_03291762_03308373 NA coding upstream 331989 3291762 ~ 3308793 (+)
CI01000029_03266557_03286137 NA coding upstream 354637 3266483 ~ 3286145 (+)
CI01000029_03649051_03684709 IGF2R coding downstream 2687 3649051 ~ 3684880 (+)
CI01000029_03689026_03697933 SLC22A2 coding downstream 42662 3689026 ~ 3698074 (+)
CI01000029_03708374_03721140 NA coding downstream 62010 3708374 ~ 3721140 (+)
CI01000029_03830894_03838298 NA coding downstream 183243 3829607 ~ 3838325 (+)
CI01000029_03855238_03922931 MLLT4, AFDN coding downstream 208874 3855238 ~ 3923120 (+)
G153513 NA non-coding upstream 37948 3602590 ~ 3602834 (+)
G153509 NA non-coding upstream 46459 3588702 ~ 3594323 (+)
G153505 NA non-coding upstream 68712 3571841 ~ 3572070 (+)
G153504 NA non-coding upstream 69350 3571151 ~ 3571432 (+)
G153491 NA non-coding downstream 52118 3698482 ~ 3731627 (+)
G153492 NA non-coding downstream 103948 3750312 ~ 3984500 (+)
G153541 NA non-coding downstream 286741 3933105 ~ 3943762 (+)
G153555 NA non-coding downstream 346189 3992553 ~ 3994376 (+)
G153561 NA non-coding downstream 355960 4002324 ~ 4002561 (+)
G153475 NA other upstream 78778 3545125 ~ 3562004 (+)
G152451 NA other upstream 877843 2761594 ~ 2762939 (+)
CI01000029_01526863_01527414 NA other upstream 2112883 1526754 ~ 1527899 (+)
G151495 NA other upstream 3268860 366541 ~ 371922 (+)
G151415 NA other upstream 3415537 170521 ~ 225245 (+)
G153790 NA other downstream 1087225 4733589 ~ 4740107 (+)
G154587 NA other downstream 1624656 5271020 ~ 5271535 (+)
CI01000029_05461497_05468985 BATF other downstream 1810877 5461497 ~ 5470346 (+)
G155079 NA other downstream 2636321 6282685 ~ 6288398 (+)
G155083 NA other downstream 2785171 6431535 ~ 6490294 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location