AMCG00003695


Basic Information

Item Value
gene id AMCG00003695
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 15065016 ~ 15096524 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003695
GCCGGGGCCCTAGTGGAGGCATTGAGAGAGGGACCAGGCACTGCGGACATGACCACCTTCGATGACATCTTGGAGGAGGCTGGGAAGTTTGGGAGGAGCCAGAAGCGCGTCTTCGGGCTGCTGTGCCTGGTGTCAATACCCTGGGCTGGGATCTATGTCGGGATTGTCTTCCAGGGCTTCACGCCAGAGCACTGGTGCCGGGACGCGCGGCTGGAGAAGCTGAGAGAGCGCTGTGGATGGGGCCTGCAGGACACCAAGACCTACTCCGCACCCCTGGTGAACACCTCGGGGGGTCTGATGCACAGCAAGTGCGAGACGTACAATGTGGACTGGAACCAGACTGCTCTCGTCTGCCAGCACCCCCCGGCCAACATGACGGCAGCGTCTTGGAAGAACACGGCACTCATCTCCTGCAGGGATGGCTGGGAGTTCGACTACGAAGGCAGGTCTTCATTCGTGACCGAGTTCAACTTGGTATGTGAAGACGCCTGGATGGTGGATCTCTTCCAATCAGCTGTGAACGTGGGGTTCCTGGTGGGCAGTATTATTATTGGATATATGGCAGACAGgttCGGCCGAAAGATCAGCTTTCTGATGTCCAATCTCTTCAATGCGATAACAGGAATTCTGGTGGCTGTCTCTCCCAATTACATCGCCCTGTTGGTTTTCCGAACACTGTATGGACTTGGTGTCAAGGGGGGCTGGGTTGCTGGCTATGTTCTCATTACCGAATTGGTGGGAGTGGAGTACAGACGGACAGTTGGAATCCTCTACCAGATGTTCTTCAGTATTGGAATCCTAATCCTGCCACTGGTTGCTTACCTCATCTCTGACTGGCGATGGCTGCAAGTGGCTATCACCGCACCTTACTTTGGTTTCTTAGTCTATTACTGGTTCATTCCTGAGTCGCCAAGGTGGCTACTGTCCCAGAAGGAAAACAGCAAAGCTGTGACTATCACAAAGGCAATCGCTAAAGAGAACAAGAAAACACTATCCAAAAACCTGGAGACTCTCACAGGTGACAGTGAGGAGATTTCGAAAGTCTCAGTCCTTGACTTGGTCAGAACTCCGAAGATGAGGAAGTACACACTGATTCTAATGTTCAAttgGTTCACAAGTGCTGTGGTCTACCCAGGCCTCATCATGCGTCTGGGGATCCTTGGTGGCAACATTTACATAGACTTCCTCATCTCGGGAATGGTTGAATTCCCTGCTGCATTACTCATCCTGTTCACCATTGAGCGCATCGGGAGGCGTGTCCCATTTGCAATGGCCAACATCGTGTCAGGGGCAGCCTGTCTCATTACTGCTTTCATACCCGAGAgtgttttcTGGCTTAAAACGGCAGTCGCCTGCGTGGGCAGGTTAGGTATTACGATGGCCTTTGAGATGGTGGTGTTCGTCAATACAGAATTATACCCCACGTTTATCAGGAACCTGGGGGTGTCTGTGTGCTCCACGTTCTGTGACATCGGGGGAATTGTGGCCCCGTTCCTGCTGTACCGGTTGGCAGTTATATGGATAGAGCTGCCACTCATAATTTTTGGAGTGCTGGCCTTTGTTGCTGGGGGCTTGGTCTTTATGTTGCCTGAAACGAGAGGCGTCCCCTTGCCAGAAACAATAGATGACATTGAGCACCCCTATAACTATCTGGACACAATGCCAACTTTTGATGAGCTGTTAGTGGACGTGGGTGAGTTTGGACCTTACCAGAAAAGGGTTTGTCTACTGGGGTGCATTCCAGGGATAttatttgccttttcttttgtggggATTGTTTTCCTGGGGAACACGCCAGATCACTGGTGTCGGAGCCCAGAAGCGGAGGAGATCCAGCAGCAGTGTGGCTGGACGCAGGAGGAGCTGAGGGCGTTTACAATCCCCCAGTCCAGCCAGGGCGCCTACAGCCAGTGTGAGAGATTCGATGTGGACTGGAACAGCACTGAGCTCAATTGCAGCCGCCCACTGCCCCTCTCCTCCACCAACTCCACCGAGCGCCTGCCCCTCACCGCCTGCGACAGCGGCTGGCAGTTTGAGGAATCTCGCTCCACTATCGTCACTGAGtttgaCCTGGTATGTGAGGACGCATGGAAGGCCGATCTCAACCAAGCTTTTCTCAATGCGGGTTTTCTATTGGGAGCCGTGGTCATAGGATATGGAGCAGACAGGTTTGGCCGGAAGTTGTGTTTCCTGATCTCCATTTTCGGGTTGGGCATCTCCAGCGTAGGATTGATTTTTTCCCCAAACTACAGCTTGATCTTGTTCTTCCGCTTTGTCCAAGGCATCTTCGGGAAAGGAGCCTGGATGTCTTCGTATGTGTTGGTGACTGAGATTGTGACCTCCCAACACCGACGACTGGTGGGAATTGTGTGTCAGCTATTTTTTACTTTCGGTGTCATCATCCTGCCTGGAATTGCTTATCTCATCCCTCCGTGGAAGATGCTACAACTCGCCATTACTATACCATCCTTCCTCTTATTAACATACTATTGGCTGATGCCGGAATCTCCCCGTTGGCTGTTGACAGTTAACAGAACCAAGGAGGCCCTGCGCATCGCTGAGAACATGGCCAAGCAGAATGGCACCCAGCTGCCGGAGAAGTACAGCACTGTGGAACTGCTGGAGACTGTCCCAGAAAAGACATATATCCCTTCCCCTTTGGACGTGTTCAGGACTCCACAGATGAGGAAATTTACACTGATCCTAATGTATGCCTGGTTTACAAGTTCTGTGGTCTATCAAGGGCTTGTTATGCGCCTTGGAATAATTGGAGGGAATCTGTATCTTGAGTTTTTCATCTCTGGAATTGTGGAGCTGCCTTCGGCCTTGATTTTCTACCTGACCGTGGACAGAGTGGGGAGACGGATTCCCTTTCTCTTGGCAAACATTGTGGGAGGATTGTCATGTTTAATAACTGCTTTTATACCAGATGatATCACTTGGCTGAAGACTATCATAGCAGTCATTGGAAGACTTGGAATAACCCTGGGGTTTGAGATTGTGTACCTGGTCAGTACTGAGCTCTACCCCACACCCTTAAGGAACCTTGGAGTCTCCATTTCTTCTTCACTCAGTGATGTAGGAGGAATCGTAGCCCCTTTTCTGCTGTTCAGGCTGGCAAATATTTGGATAGAGCTGCCAATGGTTTTATATGGAGTCATGTCCTTGATCTATGGTGGTTTAGTGTTGCTTTTACCCGAAACAAAAGGTATTGATCTACCAGAGACCATTGAGGATGTAGAGGCTTTAGGAAGGGCCACCAAAGCTGTATTGGACACAAACAAGAGAAAGGCTAAAGATGGGATCATCTGACCAGAGGGGAACAAACTGCATGGTTTAGCCGATCCCAAACTCAGGAAATTACATTTGAGTCGGGGGAACACAAGACTTTGGAAGAAAAGTGCTAGATCTCAGAGTGGACCTTCCCTTTTCTAGAGATAGTCAACTGCATTGGATCAGTGCTGCTTATCCAGTATGGTTACTCGGTAACAAGTAACCCATCTTGGTGACAATCTATATATTCTCAGTCTGTGAACtttacaaaactatttaaaatagtaataagaataattatatGAGTTTTAACCATTTGAACATTGACTTGGTTATTCTGGTGCCTTTATTATCCATGTTACCAAAGTGTTAATGCTGTGTATTATTTCTCCTAAAGTATtggacacacaacacagaccagTATTCAAAAGTCTTGTACCATTCAATaggtaaaagaaaacacaaataaatgtaattagaaCATTGTACCTTTATGAATTAATATTGtacattgatatatttaatgGATAAAGTCATATTTAGCTTTTGTACcacattgaataaatactgCTGCACACTGTACAGTTAGAGGATATTATGTATAGATTCCTCTGTAAGTAATATAATGGCTTTGGTCATGTATGTAAATGCATAACATATTTCTTATGTTAGATGCATATAAAACAACTTCAGGACATTTGAACCTTTAGCTCTGTCTCAACACAGTAACTCTTACACTGAGAAGCACAACCAGAGAATGACAAATCTCAAAACAAGTTAAAATTGTAGATGCTGAAAACAAAGTTTCAAGTTGTGGATCACTTTGTTTGCTTGACATTGTATTGAGTATAGTTCAGATAAACCATAGTTCTGATTAGAAGACAACAATCACTTAGAGCTGTAATGTAGGGTACAGATGACAATTCATTTATCAGGTGGTTTCTGAGCTTGATCTTAGATGCCAGGAGATGTCTTGACCTGTTGACCTGTGCTCTTAGGATGTAGGATATCTTACTTCCCTCTGTGACCTGCACTAGAGAATCAATAGATCatagtttttgtctttttaattgtgtCTTTATGTACTAAATGTAAATAGTCttccaaaaaaacacaataaaaaatgcttttctgtacaaacaaatcacattgcATCTGCAACTGATAGATGCAGTGTTATTTATCCTGTGAAAAAGTAATCTGGTTAATCTCCATAAAAGGCCCATATTTAAGTCTTTGGTGTCTGTTGTTATGCTGTCTAAAGGTGCTGAATGTGGATATGACACCTAATGGGAAAATACTTTTGTATGAGACAAGATGTACTAGATCCACAAACAGGGTGGGAGCGAGCACAGAGAAgcagatttgtgtgtgttgtggttcTTTGGTCAACAATCTGGGGTTTCATTATCATCTGTGTGATTGGTTAACCCTTTTACATCACTGCCAGGAACAGAACAATATTGATTACATACCTAATAAATTCTGCACTATTAACCTTTGTTTCATGCCCTACAATTCTTGAAGTCCATTTCCACATGTAGAAATGT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015075 ion transmembrane transporter activity molecular_function

KEGG:

id description
K08200 SLC22A3, OCT3; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003695 True 4823 mRNA 0.46 21 15065016 15096524

Neighbor

gene id symbol gene type direction distance location
AMCG00003696 NA coding upstream 10645 15019408 ~ 15054371 (+)
AMCG00003691 NA coding upstream 59739 14996897 ~ 15005277 (+)
AMCG00003688 NA coding upstream 447824 14607986 ~ 14617192 (+)
AMCG00003682 NA coding upstream 484106 14564528 ~ 14580910 (+)
AMCG00003681 NA coding upstream 506823 14555990 ~ 14558193 (+)
AMCG00003693 NA coding downstream 8220 15104744 ~ 15121566 (+)
AMCG00003694 NA coding downstream 48098 15144622 ~ 15156393 (+)
AMCG00003703 NA coding downstream 158532 15255056 ~ 15289576 (+)
AMCG00003705 NA coding downstream 237477 15334001 ~ 15334318 (+)
AMCG00003701 LOC106607895,LOC106571478 coding downstream 256954 15353478 ~ 15370866 (+)
G2517 NA non-coding upstream 34648 15006346 ~ 15030368 (+)
G2446 NA non-coding upstream 643706 14420731 ~ 14421310 (+)
G2380 NA non-coding upstream 985689 14079112 ~ 14079327 (+)
G2336 tgfb2,LOC106584161,LOC107689010,LOC106605021,LOC107725266 non-coding upstream 1523862 13539972 ~ 13541154 (+)
G2334 NA non-coding upstream 1549951 13514660 ~ 13515065 (+)
G2563 NA non-coding downstream 18105 15114629 ~ 15114837 (+)
G2564 NA non-coding downstream 19181 15115705 ~ 15116972 (+)
G2571 NA non-coding downstream 32072 15128596 ~ 15130200 (+)
G2619 NA non-coding downstream 276671 15373195 ~ 15377637 (+)
G2641 NA non-coding downstream 320452 15416976 ~ 15419869 (+)
AMCG00003690 NA other upstream 198258 14851752 ~ 14866758 (+)
G2440 NA other upstream 645284 14418516 ~ 14419732 (+)
AMCG00003655 xdh other upstream 1858177 13155060 ~ 13206839 (+)
AMCG00003648 LOC106571761 other upstream 2022419 13025569 ~ 13042597 (+)
AMCG00003643 kif25,LOC100703631,LOC102203072 other upstream 2148014 12902566 ~ 12917002 (+)
AMCG00003702 NA other downstream 204556 15301080 ~ 15318228 (+)
AMCG00003712 extl3,LOC106571659,LOC106608199 other downstream 928347 16024871 ~ 16039640 (+)
AMCG00003744 NA other downstream 1936046 17032570 ~ 17042594 (+)
G3047 NA other downstream 2585293 17681817 ~ 17683988 (+)
AMCG00003779 ctsb,catb,LOC107381178 other downstream 3035395 18131919 ~ 18142633 (+)

Expression


Co-expression Network