RNA id: AMCG00003593


Basic Information

Item Value
RNA id AMCG00003593
length 2935
RNA type mRNA
GC content 0.52
exon number 23
gene id AMCG00003593
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11107394 ~ 11132470 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTGTGTTGTGGAATACAGAGCACTGGGGGTTCCTCTGAAGGTAGAGCAAGCGAACAACGCCCGGGATGCCATGGCGAAGGCGGTCTACAGCCGCCTGTTTGATCACGTGGTGAAGAGGGTCAACCAGTGCTTCCCCTTCGAATCCTCCTCCTTCTTCATCGGCGAGCAAGAGCTGTATCAGAAAGAGGGCCTAGGGGTGAATGAAGTTCATTACGTTGATAACCAGGACTGCATAGATCTGGTTGAAGCCAAGCTGGTGGGAGTTCTGGACATTCTGGATGAAGAAAACCGTCTACCTCAGCCCAGCGACCAGCACTTCACAGAGACGGTGCACAAGAAGCACAAGGACCACTTCAGACTCACAGTTCCAAGGAAGTCTAAGCTTGCCGTTCACCGCAACGTGAGGGATGACGAGGGCTTCATCATCAGGCACTTTGCTGGAGCTGTGTGCTATGAAACAACCCAGTTTGTGGAGAAGAATAATGACGCCCTGCACATGTCTCTCGAGTCGCTCGTGTGCGAGTCGAAGGATAAATTTGTGCGGGAGCTTTTTGAAAACTCCAATAATACGAAGGACTCCAAGCAAAAGGCTGGGAAACTCAGCTTTATTAGTGTAGGGAACAAGTTTAAGACGCAGCTCAATATTTTACTTGAAAAGCTTCGCAGTACAgGATCTAGCTTTATTCGCTGTGTGAAGCCAAATCTGAAGATGGTCAGTCATCAGTTTGAAGGGGCGCAGATCCTGTCCCAGCTGCAGTGCTCAGGAATGGTGTCCGTGCTGGACCTCATGCAAGGGGGATTCCCCTCCCGAGCTGCCTTCCACGAGCTTTACAACATGTACAAGAAGTACATGCCACCCAAGCTCACACGGCTCGACCCCCGACTGTTCTGCAAGGCTTTATTTAAGGCTCTcggattaaatgaaaatgactaCAAGTTTGGCTTAACAAGGGTGTTCTTCAGACCTGGAAAGtttgcaGAGTTCGATCAAATCATGAAATCTGACCCTGATCACCTGGCCGAACTGGTGAAACGTGTCAATAAGTGGCTCATTCACAGTCGCTGGAAGAAAGTGCAGTGGTGCGCGTTGTCTGTTATCAAACTGAAGAACAAGATGAAATACCGAGCGACGGCCTGCATTAAGATGCAGAAGACTGTCCGTATGTGGTTATGTAGGAAAAAGCACAAACCACGCATTGATGGCCTGGTTAAGGTGCAGACTCTGAAGAAGAGGATGGATAAGTTCAACGAAGTGGTGAGCGGGCTGAAGGAAGGGAAGCAAGAGATGAGCAAGCAGATCAATGAACTGGACACCTCCATTAATGCTATGGTGGCTAAGATCAAGTCCACAGTGATGACTCGGCAGGAGATCGACAAGGAGTACCAGGGGCTGGTGAAGCGCTCTGAGCAGCTGCTGACGGCCATGCAGAAGAGgaagcaggaggaggaagagagggagcgATTGCGGCGCATCGAGGAGGAGATGGAGCGAGAGAAGAAGCGCCGCGAGGAGGAGGACAGGCGACGCAAACAGGAAGAGGACGACCGCCGACTGAAAGCAGAAATGGAGTTGAAGAGGAAGCAAGAGGAAGAGGAGCGTaagaagagagaggaagaggagaaaagaCTACAGGCGGAGATGGAGATGCAGTTCGCGGccgagagggaggaagaggccCAGAGACAGGCCGTACTGGAGCAGGAGCGCCGGGACCGAGAGTTGGCCATGAGGATCGCCCAGAGCGAGGCCGAACTCATCACTGAGGAGACCCAGCCCGACGCTGCCTTGCGCAGTAACGGCACCTCACTCACTCCCGTCCCAGTGAAGGCTAAGGAAGAAATGGCCAAAGAAATGTCTGAGCTGCTGTCTAGGACTCCCACTATCCCACCGGTTTATAGAGGCTGCCGGATGTTCAAGTCCAAGGCGGTCACTCTCCCATCCCAAGGTCACTGCGTGTTCCAGGAACTCAGAATAGCCGTTGCGATTTACAAGGGCCTGTATGAGACAGTGGAGTTGCTCTCGCTCAATCGCTGCGTCTCGCTTGCTTCCTCTCGCAGGGGGCCACAGGTGCAGGCGACCAAGGCGGCTGCGGGCACCAAGAAGTACGAGTTGAGCAAGTGGAAGTACGCCGAACTCCGGGATGCCATCAACACCTCGTGTGaTATTGAGTTGTTGGCAGCTTGCAGAGAGGAGTTTCACCGCAGGCTGAAGGTCTATCATGCTTGGAAGTCAAAGAACAAAAAGCGCAACACTGAAACCGAACAGCGGGCACCGAAGTCAGTCACGGACTACGCCCAGCAAAACCCTGCCCCCCCAATGCCAGCGCAGCAACAAGAGATTGCGATGAACCGGCAGCAACGTTATTTCCGCATCCCTTTCATCCGCCCTGCCGACCAGTACAAGGACCCCCAGAACAAGAAGAAAGGCTGGTGGTATGCCCATTTCGACGGGCCCTGGATCGCTCGCCAAATGGAGCTGCACCCAGACAAGCAGCCGATCCTGCTTGTGGCCGGCAAGGATGACATGGAGATGTGCGAGCTGAGTCTGGAGGAGACCGGGCTGACCAGGAAACGGGGGGCTGAGATTTTGCCAAGGCAGTTTGAAGAGATCTGGGAGCGCTGCGGGGGGATACAGTACCTCAGGAGCGCGATCGAAACCAAGCAGGCAAGACCCACGTACGCCACGGCCATGCTGCAGAACCTCCTCAAATAAGCGCCAGGTCCCATGCTTGATAATATTAAGGGGAGGAGTAGATAACCCTTCTAGTGGAGCAAAGGGAAGACTGCactcattgttattattaaggGCATTTAATTATAGTTATCTCACTGGGGGCATCCAAGTTTTAAGTGAACTGATTCCTGTTCAATCtttctttgttgtttatttttttgtttttctactcccattttttttttttttttttttt

Function

GO:

id name namespace
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function

KEGG:

id description
K10358 MYO6; myosin VI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2211 lncRNA upstream 56750 11050151 ~ 11050644 (+) True G1855
TU2056 lncRNA upstream 649629 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 869133 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 1403916 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 2000630 9100618 ~ 9106764 (+) False AMCG00003544
TU2254 lncRNA downstream 95489 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 198569 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA downstream 235553 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 329868 11462338 ~ 11482931 (+) False AMCG00003604
TU2383 lncRNA downstream 437582 11570052 ~ 11570410 (+) True G1987
AMCG00003594 mRNA upstream 8434 11084163 ~ 11098960 (+) True AMCG00003594
AMCG00003591 mRNA upstream 58818 11025209 ~ 11048576 (+) True AMCG00003591
AMCG00003585 mRNA upstream 449821 10636488 ~ 10657573 (+) True AMCG00003585
AMCG00003590 mRNA upstream 475914 10629573 ~ 10631480 (+) True AMCG00003590
AMCG00003583 mRNA upstream 484022 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003598 mRNA downstream 129263 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003599 mRNA downstream 183731 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003603 mRNA downstream 316850 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003604 mRNA downstream 329193 11461663 ~ 11482496 (+) True AMCG00003604
AMCG00003606 mRNA downstream 357769 11490239 ~ 11491597 (+) True AMCG00003606
TU1883 other upstream 1326492 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 1843926 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2454990 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4612489 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 357715 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 441261 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1904967 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2022590 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3286046 14418516 ~ 14419732 (+) True G2440

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024145 False 4237 mRNA 0.50 33 NC_007128.7 36687173 ~ 36842267 (-)