RNA id: AMCG00003594



Basic Information


Item Value
RNA id AMCG00003594
length 717
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00003594
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11084163 ~ 11098960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGGATGGCAAGCCGGTGTGGGCGCCCCACCCAACAGACGGGTTCCAGCTGGGCACGATCGTGGATATCGGAGCAGACACCCTAACGATCGAACCCTTGAACAGGGGCAAGCGCTGTAACTTTCTTGCTAATCCAGTGCTCGGGACCGGCACTGAAACGCCAAATTCCCTGTCCGAGTTCGAGCTTGCGGAATTAAAACGTATACATTTCGCATATTTAAACCCTTGCTCCCGGAAACGGCCCAGTTCATTTCATTGCAACGGCACGTATTTGACAGAATCCTACGGAACAGGACAAGATATTGATGAGAGAATAGTGGAAGCGAATCCCTTGTTGGAGGCCTTTGGAAATGCGAAGACTGTTCGAAATAATAACAGCAGCCGTTTTGGCAAATTCGTAGAAATCCACTTCAATGAAAAGAATTCAGTGGTTGGAGGGTTTGTCTCTCACTACCTGCTGGAGAAGTCCAGGATCTGCATGCAAAGTAAAGAAGAGAGAAACTACCACATTTTCTACCGCCTCTGCGCAGGAGCCTCCGAGGACATCAGACAGAAGTTTCACTTGAGCGCCCCAGACAGCTTCAGGTATCTGAACCGTGGCTGCACCAGGTACTTTGCTAATAAGGAAACGGACAAACAGATTCTGCAGAATCGCAAGAGCCCCGAGGGCTCCCTCCCTTCTGTCTCTGCACCGGTTTTCTCTGCACCCTTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2211 lncRNA upstream 33519 11050151 ~ 11050644 (+) True G1855
TU2056 lncRNA upstream 626398 10431664 ~ 10457765 (+) True G1747
TU2011 lncRNA upstream 845902 10236856 ~ 10238261 (+) True G1706
TU1863 lncRNA upstream 1380685 9700557 ~ 9703478 (+) True G1574
TU1701 lncRNA upstream 1977399 9100618 ~ 9106764 (+) False AMCG00003544
TU2254 lncRNA downstream 128999 11227959 ~ 11228275 (+) True G1891
TU2270 lncRNA downstream 232079 11331039 ~ 11403029 (+) False G1902
TU2269 lncRNA downstream 269063 11368023 ~ 11403029 (+) True G1902
TU2326 lncRNA downstream 363378 11462338 ~ 11482931 (+) False AMCG00003604
TU2383 lncRNA downstream 471092 11570052 ~ 11570410 (+) True G1987
AMCG00003591 mRNA upstream 35587 11025209 ~ 11048576 (+) True AMCG00003591
AMCG00003585 mRNA upstream 426590 10636488 ~ 10657573 (+) True AMCG00003585
AMCG00003590 mRNA upstream 452683 10629573 ~ 10631480 (+) True AMCG00003590
AMCG00003583 mRNA upstream 460791 10617557 ~ 10623372 (+) True AMCG00003583
AMCG00003581 mRNA upstream 552078 10506558 ~ 10532085 (+) True AMCG00003581
AMCG00003593 mRNA downstream 8434 11107394 ~ 11132470 (+) True AMCG00003593
AMCG00003598 mRNA downstream 162773 11261733 ~ 11273160 (+) True AMCG00003598
AMCG00003599 mRNA downstream 217241 11316201 ~ 11343024 (+) True AMCG00003599
AMCG00003603 mRNA downstream 350360 11449320 ~ 11460063 (+) True AMCG00003603
AMCG00003604 mRNA downstream 362703 11461663 ~ 11482496 (+) True AMCG00003604
TU1883 other upstream 1303261 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 1820695 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 2431759 8649125 ~ 8652404 (+) True AMCG00003534
TU1202 other upstream 4589258 6487692 ~ 6494905 (+) True G1012
TU2334 other downstream 391225 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 474771 11573731 ~ 11577329 (+) True G1989
TU2685 other downstream 1938477 13037437 ~ 13042597 (+) True AMCG00003648
TU2754 other downstream 2056100 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 3319556 14418516 ~ 14419732 (+) True G2440

Expression Profile