RNA id: XM_022672565.1


Basic Information

Item Value
RNA id XM_022672565.1
length 3187
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC103043117
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 1329338 ~ 1343052 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCTCTCTGCTGGAGACTCTGTTCAGAACCATCTGCTGGATCCAGATCAGCTCAGTCCGGGTCGGGACTCGGAGGGTCGGATCATGACGGGTCTGGGGCAGTTCAGTAAAGGAGCTTCCTGGGAGGAACTCATTTATACCTGTGTTCAGTCTTTTGATGCTGAAGGTAATGTTTGTCACAACAGCCATCTACTGAACATCACGCTCACCATGCACAGATTACTGCTGACCTCCAATCAGCTGCTGGACAAGCTGCTCATCCTCTTCAGAAGTACACTGGAGGAGAATAAATCAGAAGAGTGTCTGAAAATGTGCTATTTTATTAGgtaCTGGATCAGTGAGTTCTGGTCGATGTTCAGGTTGCACAGTTGTTTATCAGAGTCAGTGGAGCAGTTTAAGGATCTGATGAGAGAACACGGGCAGGAGCAGCTCTGCCCTTTACTGCAAACTAAGTGGATGGGTGACAGAGAGTGGTCTCGCAAAGCCAGTCAGAAAATCAAGGCCAGCAGTAAGAAGAGGAAAGTATCTCTGCTTTTTGATCATCTGGAACCGGTGGAGTTAGCAGAACATCTCACTTACTTGGAGTTTAAATCCTTCTGCAGAATATCTTTTTCAGATTATCAGAAGTACATCCGGAATGAGTGTTTAACAGAGATCCCTGCAATGGAGCGCTCCATCGCACTGTGTAACGGTATCTCCCAGTGGGTCCAGCTCATGGTTCTGAGTCGACCCACTGCTCAGCTCCGAGCTGAAGTCTTCACCAAGTTCATTTATGTTGCCCAGAACCTCCAGCAGATGCAGAACTTTAACACACTAATGGCTGTGGTGGGAGGTCTCTGTCACAGCTCCATCTCCAGACTGAAAGACACCTGCACATATGTGCCAAACGAGACCACCAAGGTTCTGAATGAAATGACGGATCTTCTTTCATCATGTAGAAACTATGAGAACTACAGACAGATGTACAGCAAGTGCTCAGGCTTTAAGATCCCCATCCTGGGGGTTCATCTCAAAGACCTGATCGCTGTGAACGAGGCCATGACTGACTACCTGGAGAATGATAAGATTAATGTGCAGAAGCTTCAGGCACTCTATAATCACATTAATGAGCtggtccagcagcagcagaacccTCCTCTCCTGGATGCCAACAAAGACCTGGTTCACTTACTGACGCTGTCTCTGGACCTGTATTACACTGAGGATGAAATCTATGAGCTGTCTTATGCAAGAGAGCCTCGGAACCACAGAGCCCCGCCTGCAACTCCCCACAGACCCCCAGTGGTGGTGGACTGGGCTTCAGGTGTGGCTCCCAAACCCGACCCCAAGACCATCAGCAAGCATGTTCAGAGAATGGTGGATtCTGTATTCACAAACTATGATCATGATGGAAGAGGCTTCATTTCTCAGGAAGACTTTGAGAAAATCGCTGCAagctttcctttttctttttgtgtgaTGGACAAGGACAAAGATGGACTCATCAGCCGAGAGGAGATCACTGCCTATTTCATGAGGGCGAGTGTTATCTGTTCCAAACTTGGTCTGGGCTTCTCTCACAACTTCCAGGAGATGACGTACATGAGGCCAACCTTCTGTGATAACTGCTCAGGATTTTTATGGGGTGTTATTAAACAAGGCTACAGATGCAGAGATTGTGGAATGAACTGCCATAAATCCTGCAAAGATCAAGTGGCATTTGAGTGTAATAAAAATGCCAAAACAAGCGGTAATCCAGACTGGAGTCCGTCTTCTAATACTGCAGACAGTGCAGCACCAGGAGGCCATGATGGTCCGGATGAAGCTCAGTTCATCTACACGGGCGATCCTCCTCCAGACTGCACCAATCAGCCAAATCCTGCATCCTATTCCAACCAATTAACTGTAGCATCAGGGACCTCCCTGGTGAACAGGAGCACCCAGACAGAGGCGGCTCTAACCCCCAGCCTGCTGCAGCCCACCCTGCTGACCCCCAGCCCATCACTCAGCCCCTGCCCCAGCCCTGTACCCCAGCGCAAACGAGCTGCAGCCAACAAGCTCTCCATCACCCTCAACCCTGGAGACGAGAACAAATCCACCCATGAAGCTCTGGAGAAGGAGAATCAGTCTCTTATAAAGACCAACGAGAGCCTCCGGAGGAAGCTGAAAGAAGCTCAGCGCGAGATAGAAATCCTGAAGACCCTCCTGAAGCGACACACTCTTCGGCCTGTAGAGGAAGACTCAGCCTCTTCCTCATCTTGacctcatctttttttttttttataactgctGTCCCTTCAAAATACCGAAACAGACACTTAAGAGACGCAAGGCATGAAGaaagactgttggtggggtgtaagatagcaatgagcataatGCTGCGCCGACTACCAACGAAGTCACGTTTTAGTTAAAAACTACAGGTAAagtttttttgctgctttaaaACACCAACTTTAACTTGATAACAGTTTATTAATTAGCTGTATGGATCAGGATCATTTGTATTAAAAGCAGAactaacactaaaatgtgcagagcaATGAGCCTCCAGGACCCGGGACTGTCTGAAATGCAAGATAAAGCCTTTTATTTAGCTGTGTTACTAACTGTGTATTTTCACCCAATAAAACAGAAGGCTATAATACAAAGCTTTAATTGCCTGAGTGCACAACATCCTgagaagctcatctgttgctgcacagtttgtctTGATCACAGAACTATAAAGTGCCACTATATGGTGAATGGAGCAGATAAAATGTGACAGAGTAGAAACAAGGAGATTTTCTAGACGTAGCGTTAGAAATCTCTAATGtctaatttgttttagtttaaaaacaacCTCAAAGTtaattgggagattgctggtttgaatcccggtcatgccgcttgccatcagctgcgggagccctgagagagcacaatcgtTGCTGTGTTAACACTTAAAGGTGTTAACCTGCATCCTGAGACATTTACATTATGTGCTAGGCTGAAAGATGCACTTATTGTGGTGTAATTTGTCTGATTTTGTTgattgtctatatatatatattaaactaatGTAAAgatgtgagaaaaaaaactaatagtCTGATTAATGTTTCAATAATAAATTTAGTGCTGCAGCTTAAACCATATTTACTGAATTTCCTGTGGTTTAACATTCGTCAATAAGCACAATAAGCcgattaagataaaaaaaa

Function

GO: NA

KEGG:

id description
K04350 RASGRP1; RAS guanyl-releasing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104310 lncRNA downstream 11215 1278158 ~ 1318123 (-) False G77361
TU104313 lncRNA downstream 11215 1278554 ~ 1318123 (-) False G77361
TU104312 lncRNA downstream 11215 1281263 ~ 1318123 (-) False G77361
TU104309 lncRNA downstream 11215 1306481 ~ 1318123 (-) True G77361
TU104292 lncRNA downstream 95921 1231285 ~ 1233417 (-) True G77344
TU104400 lncRNA upstream 1004 1344056 ~ 1345290 (-) True G77421
TU104401 lncRNA upstream 2302 1345354 ~ 1346516 (-) True G77422
TU104404 lncRNA upstream 95413 1438465 ~ 1440984 (-) True gpx2
TU104420 lncRNA upstream 173892 1516944 ~ 1519955 (-) True LOC103036887
TU104421 lncRNA upstream 174646 1517698 ~ 1519955 (-) False LOC103036887
XM_022672561.1 mRNA downstream 63924 1234345 ~ 1265414 (-) True grhl1
XM_022672562.1 mRNA downstream 63925 1234345 ~ 1265413 (-) False grhl1
XM_007255091.3 mRNA downstream 110693 1213559 ~ 1218645 (-) True LOC103038386
XM_022672555.1 mRNA downstream 500323 821625 ~ 829015 (-) True abraxas2
XM_015607303.2 mRNA downstream 575225 750827 ~ 754113 (-) True LOC107197769
XM_015606975.2 mRNA upstream 5896 1348948 ~ 1365774 (-) False LOC103039408
XM_007230373.3 mRNA upstream 5896 1348948 ~ 1365774 (-) True LOC103039408
XM_022672566.1 mRNA upstream 27275 1370327 ~ 1431244 (-) False LOC103042803
XM_022672567.1 mRNA upstream 96029 1439081 ~ 1441301 (-) False gpx2
XM_007230372.3 mRNA upstream 100275 1443327 ~ 1447735 (-) True LOC103039104
TU104314 other downstream 55168 1273737 ~ 1274170 (-) True G77362
TU103992 other downstream 793291 465300 ~ 536047 (-) False ivd
TU103983 other downstream 946053 382156 ~ 383285 (-) True G77111
TU103946 other downstream 1176065 146345 ~ 153273 (-) False gdf7
TU103769 other downstream 1253232 64836 ~ 76106 (-) True G76963
XR_002650296.1 other upstream 25045 1368097 ~ 1431244 (-) True LOC103042803
TU104667 other upstream 374456 1717508 ~ 1764531 (-) False LOC103034803
TU104677 other upstream 510592 1853644 ~ 1860381 (-) False srp14
TU104678 other upstream 510592 1853644 ~ 1860381 (-) True srp14
TU104704 other upstream 699946 2042998 ~ 2047241 (-) True LOC111193168

Expression Profile