RNA id: XM_015608531.2


Basic Information

Item Value
RNA id XM_015608531.2
length 1672
RNA type mRNA
GC content 0.54
exon number 2
gene id foxi2
representative True

Chromosome Information

Item Value
chromosome id NC_035900.1
NCBI id CM008303.1
chromosome length 25652880
location 11040698 ~ 11042893 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCAGTGTGGATCAGAGAGTGTCCGGTTCGGTTCTTCTGAAGTTTATCCGGGAGATGTTTGTGGAAGGAGAGCGGATCATGAGCGCCTTCGGGCCGCAGGCGGCGGGTCAGCAGGGCGGCCACAGCGCGCAGGACCTGCTGGACGTGTCGGTCTACTGCGACAACTTCAGCGCCTACcagcaccaccatcaccatcatcatcaccatcaccagcagcaccaccaccagaaccagcaacagcagcagcagcaccacgcAGTGCACGCGCCCAGCTACGGCCTGGGCGAATATGCGCCCACGTCCACCGGCTCCGGCACCACCGGCGCGCCCAGCGCCCCCAACCCGTACCTGTGGCTGAACGGCCCAGGGATCAGCCCTTCTCCCTACCAGTACCTGCAGACGGGCTACAGCGCGGGCCAGCGGCAGCTCGTGGCGCCTCCTACAGGGTTCGCGGGCGCAGAGCTCGGGTGGCTCTCCGTGTCCAGCCAGCAGGAGCTCTTCAAACTCGTGCGCCCACCTTACTCCTACTCGGCCCTCATCGCCATGGCCATCCAGAACACGCGCGACAAGAAGCTCACGCTCAGCCAGATCTACCAGTATGTCGCTGAGAACTTCCCATTCTACAAGAGGAGCAAAGCGGGCTGGCAGAACTCCATCAGACACAACCTGTCCCTCAACGACTGCTTTAAGAAGGTGGCGCGCGACGAAGATGATCCAGGAAAAGGCAATTACTGGACTCTGGACCCAAACTGCGAGAAAATGTTTGACAACGGCAATTTCCGGCGGAAGAGGAAGCGCAGGGCAGATGCAGTCAAAACCGAAGTTTCTCCGGTGGATTCTCGTACCGGCAGCACGAGCGCAACCCCGTCTCCGCGAGGCCTCGGTACCTCTCCATCCGCGAGCGAGCCGCGCTCCCCGCAGTCCCCGGAACTCAGCCCATGTTTCGACAGCTTCGTGAGCCACGTGAACACCGTGCTGGGCGGTAACGGCGACGGAGCGCGCCCCGGACCCGGCACGCGCTCTCCAGTACTCAACCACGGGAGGCTGGGCAGTTACTACACGAGCGCGGGCGGGTTCAGCAGCTCCCTGTCTAATCACTTCAGCGTGGACAGTCTGATTTACAACCGCGAAGGAACTGAGGTCTAACTGCGGTTCAGTTATGTTTACGTTCCGGATCACCAGAACCACCAGGATCACCAGACACGTGCGCTGGGAATCACCACTGGAGCTCAGCATCCTGTGATCGAACTGGAAGTTTCCCAATACCATAACGAACATGAACATCGTTTGAACATCATGAACATCATCAAACTTTACCTTTTCTCCCAcgaggagggaaaaaaagaaaagtagaccTCGCGCTCTGTGAGCGCACATATTATTTTTTCACAATTCTTTGTTCTATAATTTTGTTATGTATACAGTTGTTTATCACAATACTAAACAGTTGCACTGctctgtaaatactgtacaaaCACGTTCATATCCTTCAGTTTACACATTTAGcccaaaatgcattttattttcattggcTAACACCTGTTACACCTGCAAGCATTATTGGGTGTCCAGAATCTGCAACATTTtgtaactttttaactttttttgtaaatgaatgttgatatatttttatttaatgaattttgtaaataaactgtGTTATAAAATCTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0043049 otic placode formation biological_process
GO:0009957 epidermal cell fate specification biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09401 FOXI; forkhead box protein I

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48176 lncRNA upstream 192327 10847887 ~ 10848371 (+) True G35810
TU48160 lncRNA upstream 306691 10733778 ~ 10734007 (+) True G35794
TU48099 lncRNA upstream 552645 10487115 ~ 10488053 (+) True G35748
TU48093 lncRNA upstream 567120 10471380 ~ 10473578 (+) True G35744
TU48095 lncRNA upstream 567120 10472880 ~ 10473578 (+) False G35744
TU48192 lncRNA downstream 35979 11078872 ~ 11079443 (+) True G35825
XR_002649871.1 lncRNA downstream 47399 11090292 ~ 11184100 (+) True LOC103033033
TU48203 lncRNA downstream 47476 11090369 ~ 11264386 (+) False LOC103033033
TU48206 lncRNA downstream 71756 11114649 ~ 11200184 (+) True G35832
TU48207 lncRNA downstream 111006 11153899 ~ 11159812 (+) True G35833
XM_022669432.1 mRNA upstream 39148 10747637 ~ 11001550 (+) True dock1
XM_007240718.3 mRNA upstream 554900 10476390 ~ 10485798 (+) True trim65
XM_007240714.3 mRNA upstream 598760 10437323 ~ 10441938 (+) True LOC103039374
XM_022669074.1 mRNA upstream 616453 10385012 ~ 10424245 (+) True cdc42ep4
XM_022669431.1 mRNA upstream 667357 9829485 ~ 10373341 (+) True LOC103040920
XM_022669082.1 mRNA downstream 141997 11184890 ~ 11217372 (+) True ptpre
XM_022669102.1 mRNA downstream 1030470 12073363 ~ 12094731 (+) False glrx3
XM_022669103.1 mRNA downstream 1030470 12073363 ~ 12094731 (+) True glrx3
XM_022669106.1 mRNA downstream 1508866 12551759 ~ 12564495 (+) False bnip3
XM_022669110.1 mRNA downstream 1561064 12603957 ~ 12664928 (+) False jakmip3
TU48151 other upstream 38893 10994361 ~ 11001805 (+) False dock1
TU48150 other upstream 39159 10994361 ~ 11001539 (+) False dock1
TU48092 other upstream 564915 10473374 ~ 10475783 (+) False G35744
TU48089 other upstream 565906 10473374 ~ 10474792 (+) False G35744
TU47135 other upstream 4136701 6902417 ~ 6903997 (+) True G35021
TU48301 other downstream 758565 11801458 ~ 11802204 (+) True G35903
TU48418 other downstream 1323647 12366540 ~ 12370962 (+) True G35967
TU48402 other downstream 1508887 12551780 ~ 12565971 (+) True bnip3
TU48468 other downstream 1659412 12702305 ~ 12703056 (+) True G35995
TU48945 other downstream 3420244 14463137 ~ 14463639 (+) True G36371

Expression Profile