RNA id: XR_002649173.1


Basic Information

Item Value
RNA id XR_002649173.1
length 7544
RNA type misc_RNA
GC content 0.41
exon number 10
gene id usp46
representative False

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63433792 ~ 63485021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGGGGCGTCCTGACTGGCTAGCTGGCTAGTTAACCTAGGTTACCTGCCAAGAGCAGTGATGTTTACTGCAGATTTCTCTCAGAATTTCAAAATAACGGCTCGATTTTAGCGACTAAAATGAATTGAGcttgttttggagatgtttgtCTTTTAGACGGGGGGTTTGTTTGGCTCTGAGTGGAGAAAAACACTGCTCTAAGGGGGTATAATATCAGTGTGTTGTGAGTCAGGGCTCGTCAGGCACTGCGGTTGGCCTCTCCTGGTCCAGCTGGGCTGCGGATCATCTACAGCTCTCAGCTCTGCAGCTTCTCCAGTGATGTTTGTTTTATGAAGATGTCGGCGAGGGGAACCCTGTGAACTAAATGACTGTCAGAAACATCGCCTCCATCTGTAATATGgGCACCAATGCCTCTGCTCTGGAGAAAGACATTGGTCCAGAGCAGTTCCCTATTAATGAACACTACTTCGGATTGGTCAATTTTGGGAACACATGTTACTGTAACTCGGTGCTGCAGGCACTGTATTTCTGCAGGCCGTTCAGGGAGAGCGTGTTGGCCTACAAGgcgcagcagaagaagaaggaaaatcTGCTCACCTGCCTGGCTGACCTCTTCCACAGCATCGCCACACAGAAAAAGAAGGTGGGCGTCATCCCGCCCAAAAAGTTCATCTCCCGCCTGAGGAAGGAGAATGACCTCTTTGATAACTACATGCAGCAGGATGCTCACGAGTTCCTGAACTACCTGCTGAACACGGTAGCTGACATCCTGCAGGAGGAGAAGAAGCAGGAGAAACAGAACGGTCGACTGAAGAACAACGGAACGGCcgtcactgctgaaactgagccAGAGAACAAGAACGAGTCCACCTGGGTGCACGACATCTTCCAGGGCACTCTGACCAATGAGACGCGCTGCCTCAACTGTGAGACGGTCAGCAGTAAACACGAGGACTTCTTGGATTTATCTGTGGATGTTGAACAAAACACTTCAATAACACACTGTCTCAGGGACTTCAGTAACACGGAGACGCTGTGCAGTGAATATAAATACTACTGTGAAACCTGCTGCAGCAAGCAAGAGGCTCAGAAACGCATGCGTGTAAAGAAGCTGCCCATGATCTTGGCCCTGCACCTAAAGCGCTTTAAATACATGGAGCAGTTGCACCGATACACTAAGCTGAGCTACCGCGTGGTCTTCCCTCTCGAGCTGCGGCTCTTTAACACATCCGGAGACGCCGTCAACCTGGACCGCATGTATGACCTTGTCGCTGTGGTGGTGCACTGTGGCAGTGGACCAAATAGAGGACACTACATAACAATAGTGAAGAGTCATGGCTTCTGGCTGCTTTTTGATGATGACATTGTAgagaaAATCGATGCACAGGCGATAGAAGAGTTCTATGGTTTAACTTCTGACATTTCTAAGAACTCTGAGTCAGGATACATCCTCTTCTATCAGTCCAGAGAGTGACAGCAGGAGCACAGGAGGTATATAGCAGACCGTGCAATGGGGTGAATGAAGGCAGGAGGGAAAAAACAGAAAGGGAAGACCAGTAGTTTAGTCACTGACCATAAACACCACATCCCTCAGCACTCCCCATCCCCTCCCACTCAGGACCCTTTTACTGAAACCTGTGCCAATAGCACCTGGACCTCACCTTTGCCAACACTACATTTACCAGAATTcccctctctcctctcagtTATCGCTGCACTCTGGGGAATCATTCTCCAGTAAACTGACCCTCAGTCAGTCCACCTGCATATTGAAGGCACTTTATAGACAAAAGCATCAACGAAGACCGCAACAGACACTACAGAAGCATCGGAACACCTGCTTACTCAACGATGCTTTTACAAAGCTTGAAGAATTCGAAACACTTCAGTTTCCATGTGGAGCAGTGAGGCCACTCTGGAAGCTCGACCTTTCCGAGATCTTGGCACTGCTGTGGCCTGGAAACTGTCTCTCTTCCTAGGTAACTTATACCAGAGGGCCTCTCTTTCCATTTTGGAGCTCTTATTCCAGTTTGaggttctcttttttttttttttttttcattaagtgAATGAAcagaatgttttaatttatgttttatgtgttataaatgtgtgTTACCTTGTTTAAAACTTGGGGAACAAAGGAGGACTTTCAATTCAGTTGAATGGGCTAAGTTAAGCGTAAAGATGGTCCGGTAGGAATGTTGTTTACCTTGTATCCTGTTAATAAATGACAGTGAAAAATAGTAAGGCTGATGACACAGTGTTAGAGAACTCTAACAATCTAAATTATCCGTTTATAACCCAATTATGGTGGCAATTCAACATGTCTACTTATTCATAATAtgcaaaaaggtaaaaataacttgaaatatataaaaaaaataaatttatcaTGATTCTTCTGAACACCAAACAATCATCCACGATTTGCCAAAATGCTCACCACACACCATATAATATTTGGTAACTGATTGAGGATTTGTAACCCAGTGTTGTGATAATAATTAAGGAGAAAGTTCATTAATCGTGCATTCCTATTAGACAGTCTTGACTTCTTGCTTTGTCTTACCAACTGAAAAGTCTTGCGTTACGTTGTGAATATCTCCCCTGTTCAGTTCCTCCATCTCGTATTGTCCCAAAGCAGTCTTGTTACCACAGTCTAGTCCAGACTGGTTTGATCCACTTTTTGTAGCCTCTCTGTACTGTAGGTGTTGTGTTCCCTTCACTTTTGGGTTGAGGTACAGAAAAGTGTGGTTCGTGTGTATGGTGTGGTTTCATATACACTACATAGACATGaaagtgtgtgagggtgatcTTGTTGACTGTTATGCACTATAAGAACAAAagtaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtggctttgtTGAAGGAATTTTCTTAATATGATCAGTAGCCTTGGCCAGTCTTTACAGTTTTCTACAGCAGTGCAAGTTATAAGTGAGTTATACCTGACGTAGCTTTCTCAGAAGAAAAACATAATAGTGCTTGCATCTACTCCTTGGCTGAAAGCATATAACAGTAACCAGGCCACGTAGATGCTCAGAAATGACTGAATTAGATTGATTTAAGGTCAGCAGAGTCCTTAATGCCTTACATCAGCAAAAGACTGTGCGAGGGAGAACGTCCTTCCTTCCTTTGAAGTTACTGTTAAACTCACAATGATCCTCCTACAGAGCCGAGACTCAAGGCTAAAGCTTGCGCCTCCTACTTTGTCTTGCCTTTTCTTTATGTAACAGGTTTGTTACCTAACTGCCATTGAAGAGCATGTTGCTAGCAGCTCTCGAGATAAAGGTGTGAACTTGTTAAAAGCAGTTCAGTCAGGTTAGCTCTGAAGTTCACCTCATTCTACTGCTATTAACCTTCTTAAAGATGGGTGATTCTGACTAGACTCATATCAAAGTTAAAATTACTGGGTTCCCTGAGATAAAAAAGGAGCAAATGGTCCTTATGGTATGCTCTACTGCTTGTAGATGTGAAATTATATGGATCTCAGCATTCGTCTGAGTTTTTCCAGATCAAGTTGTTGTAAGATCCCTGAACTACATTGGGAATAATCTCATGGTCGctaaattttactaaattggGGACCATCATAAGGTCCCTTTATTTTGATTGAACTTCTGACCATCCCCAGGTCCCTTTATTTGATTTGAGCTCAGCCTATCTTGAGGTCCTTGAATTTAACTGAAATCTGTACCATTCTGAGGTCCCTGAATTTGACTGAAATCCAGACCATTCCCAGGTCCCTAAATTTGACTGAGGTCCCTGAATTTGACTGAATTCTGGACCATCCCCAGGTCCCTGAATTTGATTAAAGTGCAGACCATTCTGAGGTCCCTGAAATTGACTTAAATCTGGACTTCTCTGATGTCCTTGAATTTGACTGAACTGCAGACCATTCTGAGGTCCCTGATTTTCACTAAAACCAGACTATCTTGAGGTCACTAAATTTAACTGAACTGTTGCTCTTTCCCAGGTCCCTGAATTTTATTAAAGTGCAGACCATTCTGAGCTCCCTGAATTTTACTGAATTACCAGGTCCCTGAATTTGTCTGAACTGATCATTCCTAGGTCCCTGAATTTGACTGAACTGAATATTCCCAGGTCCCTGAATTTGACTGAACTGATCATTCCCAGGTCCCTGAATTTGACTGAACTGAATATTCCCAGGTCCCTGAATTTGACTGTATTCTGGACCTTTCCTAGGTCCCTGAATTTGCTTGAACTTTAGACCACCCCAGAGTCCCTGAATTAAACCAAACTGCAGACCATCCAAAGGCCCCTGATTTTCTTTGAACTGTTGACCATACTgagattcttaaaaaaagctgTCGGCCATTTAGAGGtccatacatttaaattaactgGGAAACTCTGAGAGCAGTAGTTCCTAGAGCAGTGGTTCCTAATCCTGGTCTTGAGGTAGGAGCCTTTTCTTGCAGATGTTTTGCTCTTCCTGAGCACAGAACAGGTATTAGCCACATGCATATGTATGTAACAATAATGTTTTATCAAGTCTTCATCAAAAAAGACAATTGAATATGCTTGGTGTTGGTGTCTTCCCTGCTCTGTCACATGTGATCCAACTAATCCAGGCATTAAGATGTTTAGGGGTGTAGTCCAGTAGAAGCAGTCATAGACATTTATGTAAGTCCCTGCAGCTTGTCAATGTAGATTACAGCATATGTTTACCGAGATTCAAATTCCAAATTGTTGGGTTACACACTTAAGCGGTTAGCAGTACCATAAAGGTAGTGTGTGGGTGTAGGAACATGGTTTGGGAACTGATCCTAGATCTGTATTGATAGACAGGTTCTAGAGCTGGGAACTAGTAAAGATGGACTGCATCAAGCATAGTAAAGGGATTAAAGCCTCTATTAATAGGAAAGTTAAGACCAAGCGCACAATTTATTCAATTAATAGATGAAGGGCATTCATCAAAGAGGGCTATTGCTATAAAGGGCAGTGTTTTGGCactgagagagggggagagatcAGGTCATGTGACCATGTTTTGCATTATCTTATGAATGAAGGGCTTAGTTTGGCTGAGCATGTGATGGACTGGGTCCTGCAAGACAGAGTTTTGGTAAAAGTGTGTCATTTTCATACTATGTTATGTAGGtacataaacaaaactgtgtgtgtgtgtgtgtgtttgtgtgtgtgtctgtcataATACTGTTACTTTGTTAGTCTGTATATTCAAACAGTGCTACTGCAGTTGAACCAGAGCACAATATACTACACATAAATACTTTCagtagatttattatttttataatttatttgaagGTTACTAACACTAACATAGGGGCCACATAGCACATGCAttcaacaacaataataaagaaaaatggttGTCGATTTATTCCAGTAATTACAGAAAGATGATAAATCTAAGGTTACACATTAGGTAAATTCCCCACTCACTGAGTAGAGTATAGAGAAAAGAAGTATTCATTTATAGATATTTATGCAGTCCCTATGTAGGTAGCCTTCAAATAAAGAGTCTTGATCCTGGAATTCGCTAATCATAAGCCGTAGAGTTATAAAAAGTACCATTTCCATTGTAATGTTCTGGGTTATAGAGAAAATGGGTCAATGTTACATTTCCAGTGTTTTTACTGAAGTCTTGACCTACAGCAAACCAGTAATGTGAGAACAAGACCctaaaactttgttttaatataGCTTATCAATGTTCTCTTTGGGATCCACAGAGCACAGAGAGTGCACTTCTAGTGAAGAAATCAAACTTCTGCACCGACAGGCTAGAGCAGTCAGACTTTACAGCAGATCAAAGATGCTCCTTAGTTTCTTGTActctatatttttttcccagcattctgCTCAACCTGAAGTTGCTCTCAGAAAACAACCCTTATTAACACTATTCCCACAGCTCAAGCTGTGATCCATTTAGCCCGGTTTGACACTTTGAATTGTACAGTATATGGCAAGTGACATGGCACACGAGTTCACACACAAATCTGCTTGTTAGTTTGCAGCCCCTTTTTCTCCAGTTAGATATTCTAGTCATACTGATCTAATACTGTTCAGAAGTTTAGAATCAGTATTTCCACTTTGTTTGCAGATACAGgtataaaatgaaaatagaatTAGAAAAAGCTCTCCTGTGATGGACAGCTTTGTCCAACATGGAATCATGGAAGCTGTAATGAACATTACCATAAATCTCGAGACAGAAGgcatgttttatgtaaaatccCCATGGCTTTCAAATGGCTTTCTTTCTCTAATAACAGCACTAAAATGTCTTGTTTGTGTAAGATAAACcctataataatagtaaagtaAATCACCCCTTATTCAATTCTTGTTGAATGGtttaaataaatgtctatttttaaacccATTTTGTTTAGGGAAATGGCTTTCCAGATAGGAAAATATGGAGTAGGAGTGGGTAATGTGGCCCTAAagtattatcacaatatggcgAGGTATGTTTGCTATAATGATATTCTTAGtgatttgaaaaaaacattGGATGTTTTAAACAGAATTTCTAGAAAATActattgcaataaaaaaataataaatattatttcgtataattacacaattttatACATTCAGTAGACACAAcgaaaatctaaaaatattggGCCGTTTAGTAAACACTTTCCAAGActgaatttttataaaataaaaatattacaacaaTTAAAGTACTGAAACAACATAAATATACCGCAAAACTAgcagcatatttagtgcattaGCTAACATCAGTCAAGACACTTACTGGTAAGGTTAACAAGACACTTACTGTATTTGAAATGAGCTAATATGTTGGGAAGGGGCGTAACCGTCCTGTAATGACATGTTTATGGCATAGTAATTTCAAAAAGTTATGCAGCGCTCATCCCTGCACTACAGTTATGTCGTCACTGTGGAATAACAGAAGCTTAAAAGGACTATGCAGAAAttaccccttttttttttggcggacATATACACATAAACTTTTTGATTAAATACATCCCAAAGCAGGGAGTCAGCTGTCAAGAATTTTTCtttgttctgtgtttgtttgtcagtgtgagtgtgaagtaagagagtgtgtgtagtgtatacacTTCCATGTGATACCTTCTCATCATGGTACTGAAACCTCATCTCCTGTAGCTCTAAACGTGTGCTGCTCTCGATGTTACTGATCAAACACAAGTCTGACTTTGTGCCAAAtctctgcaaacacacacacacacacatacacacacacatacacacacacacacacaatacacactcctCGAAAACTGGAacatggaagaaaaaaataacttttatttgtGTGAGATGCAACTGTACATAAAAAATGTGTAGAATGTCTGATAGaaagaaattatatatttttaaactcaaAAGGAGCTGGAATTCTAAGGCTGTAAAATGGATTTATTATGTAGACTGGACAGTGGTGtctaaaaggaaaataaatggtGAACTGAAGAGAGATTA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40692 lncRNA downstream 120737 63307994 ~ 63313055 (-) True G30354
TU40681 lncRNA downstream 138069 63292019 ~ 63295723 (-) False G30348
TU40680 lncRNA downstream 138069 63292575 ~ 63295723 (-) True G30348
TU40668 lncRNA downstream 276138 63154931 ~ 63157654 (-) True G30341
TU40588 lncRNA downstream 299058 63125514 ~ 63134734 (-) True G30286
TU40803 lncRNA upstream 564 63466320 ~ 63468751 (-) False G30408
TU40804 lncRNA upstream 564 63466320 ~ 63468751 (-) True G30408
TU40808 lncRNA upstream 43471 63509227 ~ 63509431 (-) True G30412
TU40805 lncRNA upstream 61755 63527511 ~ 63550219 (-) True G30409
TU40817 lncRNA upstream 148010 63613766 ~ 63614344 (-) True G30421
XM_007257032.2 mRNA downstream 69381 63357911 ~ 63364411 (-) True sgcb
XM_022664357.1 mRNA downstream 77503 63335850 ~ 63356289 (-) True lrrc66
XM_022678422.1 mRNA downstream 177347 63136951 ~ 63256445 (-) True fryl
XM_007257024.3 mRNA downstream 314296 63114090 ~ 63119496 (-) True LOC103038514
XM_007257014.2 mRNA downstream 368560 63014238 ~ 63065232 (-) True trappc8
XM_022678431.1 mRNA upstream 62525 63528281 ~ 63763673 (-) True scfd2
XM_022664414.1 mRNA upstream 358116 63823872 ~ 63907665 (-) False lnx1
XM_007257039.3 mRNA upstream 358116 63823872 ~ 63907665 (-) False lnx1
XM_007257040.3 mRNA upstream 358116 63823872 ~ 63907665 (-) False lnx1
XM_007257038.3 mRNA upstream 358116 63823872 ~ 63907665 (-) True lnx1
TU40747 other downstream 98946 63330044 ~ 63334846 (-) True G30376
TU40670 other downstream 145684 63210281 ~ 63288108 (-) False fryl
TU40671 other downstream 177158 63210281 ~ 63256634 (-) False fryl
TU40672 other downstream 202226 63210281 ~ 63231566 (-) False fryl
XR_002649101.1 other downstream 1545904 61833448 ~ 61887888 (-) False LOC103043586
TU40830 other upstream 296735 63762491 ~ 63763427 (-) False scfd2
TU40831 other upstream 296735 63762491 ~ 63763226 (-) False scfd2
TU40832 other upstream 296735 63762491 ~ 63763475 (-) False scfd2
TU41381 other upstream 1317752 64783508 ~ 64787245 (-) False LOC103036530
trnad-guc_2 other upstream 1606388 65072144 ~ 65072215 (-) True trnad-guc_2

Expression Profile