RNA id: TU40668


Basic Information

Item Value
RNA id TU40668
length 1776
lncRNA type intronic
GC content 0.38
exon number 2
gene id G30341
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63154931 ~ 63157654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTTAGAAAGCTTTATTTAGAAATGCATCTCTTCAACAATTGACGTGCACAGTTTGTGTGTGGTTGGATTCCTGTTCTCATGAACTTTCAGTGACCAGGCATTTCAACCGGAATGCAAGACTTTCTTCTCACAGGTTGAAGATGATTACCGTGCATGTACATCACTGCTGACTTCATCAGGGAAAGTGGAATCGCATCATATTTCCTCGTGTCATTCACTGTAAAAAGGCCCCTCCCCTTTCTACTAGTTATACATATGAATGATTCTCTGAAAACCCGGCAGTTCTTAACAGTTCTGAGTCGTACCTCAAGATCAGCTCAAGGACATCTGCTCCTGTCGTTCCCCAGCTCTTAGTGTAATGAGTCCAGATAAAACCATCAATACTCTTACTCATCAACTCCTCCACCATAGCCATTCCCCTTAAAAGCTTTCCGTAATTCTGCTCCTGATTTGGCAGCTTGCCACAGTCCTCAGCGTTGAAGCTCTAGACTCTTAAACAGGAGGGAGGATGGAAGGGAACGGCAGGAACTCGCTCACtttgttatatattgttttctttCTATTCCAGTGACGTCTTTGTCAACTTCCAGGTCATGCTCTGCATTCTCCCACAGCAGCACTTTTGCTGTCACTCATTTTGTTTGGGGTGAGAAATAACATGCCATTCATCTTTGGCTTGTTACAGTCTCAAGCTCATATTCTGTGTCTACGTTGTGATGGTAGGCGAACGATGGTTTATTATATGATATTTAGTTGCACGGCAGCAACATATTATTGTACATACAATTTATGTAGAGACAGCATTAAAGAGTATACTGGGTATACTCttatttatgtacagtaataCTAAGATGTATGACCGTTCCAATACAATATTGGTATCGGGGCtgatattaatgtaatttaccATATCGAATATCGGGTGACCGCGGCCGATTCAcctaccgatccatattccagtccgcAGCTTGCAATAAACCCAATAAAATATGTCAATTGTCTGGAGAGTTTTCACTTTGGAAACGCTGAACAGCAGGACGGCtacatgaaaaatgtaatatgtaattgTTTCAAAATtctgaaccatctagaaaagtgtttcacactgcagatgaaCCGGACCATGTTTCAGTAGATCCGGGCCGAGACCACCTCTTTGATCAGACTAAACTCTGGTCCTAGGGTCTGGACTGTGGTTTACACCCCCTTTCACTCCAGCtactttggtttggaccaaacttaaaaaaaaatcagaaagttCAGACCAAACAGGGCGGATGTGAaagaattatattatattattatatttttgtataaaaaggCCTTATTTTTCCATTAATGCCAGTCATTGTGAAAGATTGCATAATACCCCACCCCTCTGGGTAGACACAAAATTTTGATTCGTTAGTGTCAGATACGAATCTTGaatattaaaatcatgatgTTTTCCCAATGTGGCGGAAATTGAACTGGGTCCTAGAACTAGAGGAATGCttctaattatatattaaatattacattacttacatttttttcaaatgtttttagaattttccaatatattaatttataaatcatattaattttataaattaattttataaaacatcATAAACAAATCTGCATACAGTCATGAAGATTTTATAATTGTGTtgtaagattaaaaaaaaaacaccctcatgctttttattaatgtttaagaTTCTTAGACCTGTTGTATTTCAGCAAGCTCTATGTGTGAGCGGCTTGTTATGAGTGAGTCGAGGCATGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40588 lncRNA downstream 20197 63125514 ~ 63134734 (-) True G30286
TU40608 lncRNA downstream 67975 63084327 ~ 63086956 (-) True G30296
TU40597 lncRNA downstream 85590 63066529 ~ 63069341 (-) True G30291
TU40594 lncRNA downstream 136202 63017699 ~ 63018729 (-) True G30288
TU40531 lncRNA downstream 187603 62966449 ~ 62967328 (-) True G30247
TU40681 lncRNA upstream 134365 63292019 ~ 63295723 (-) False G30348
TU40680 lncRNA upstream 134921 63292575 ~ 63295723 (-) True G30348
TU40692 lncRNA upstream 150340 63307994 ~ 63313055 (-) True G30354
TU40787 lncRNA upstream 276142 63433796 ~ 63461210 (-) False usp46
TU40788 lncRNA upstream 276142 63433796 ~ 63485021 (-) False usp46
XM_007257024.3 mRNA downstream 35435 63114090 ~ 63119496 (-) True LOC103038514
XM_007257016.2 mRNA downstream 89699 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA downstream 89699 63014238 ~ 63065232 (-) False trappc8
XM_007257014.2 mRNA downstream 89699 63014238 ~ 63065232 (-) True trappc8
XM_022664256.1 mRNA downstream 146950 62979312 ~ 63007981 (-) True LOC103046711
XM_022664357.1 mRNA upstream 178196 63335850 ~ 63356289 (-) True lrrc66
XM_007257032.2 mRNA upstream 200257 63357911 ~ 63364411 (-) True sgcb
XM_007257034.3 mRNA upstream 276138 63433792 ~ 63465756 (-) True usp46
XM_022678431.1 mRNA upstream 370627 63528281 ~ 63763673 (-) True scfd2
XM_022664414.1 mRNA upstream 666218 63823872 ~ 63907665 (-) False lnx1
XR_002649101.1 other downstream 1267043 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2785317 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2992907 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3716633 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 4220142 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 52627 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 52627 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 52627 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 172390 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 276138 63433792 ~ 63465756 (-) False usp46

Expression Profile