LOC103034188 (LOC108434976)


Basic Information

Item Value
gene id LOC103034188
gene name LOC108434976
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60149397 ~ 60162066 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39714
ATGGATTGAGGTGGTATTAAAGCTCCTGGTCAACGAGTCCGCAAAACTTCGTGTCTTCATGAACTGACTTTACTGAATTTAGTCACATAAATCTAACTGATACTTCAGCACAGGGTTATTGGGGTTTCTCACCACTGCCAGATTAATCATGACAACAGCTGCGGTGAAATTCTGCGATTATTTCTGGGTTCCGTTTAAATCCGACTGTGAGGAGCTGCTGGGCCGCTTCCAGCAAACAGACTCGGTGCGATATGAGGAGTTTGCAGCTATATGGAGAGACATGGACTTCTCCAGTGTGTTTTATGGAATGACCACACGCCTGGAGAAAAGAACTTTCACTCGCCTTGCCTTTGCCACGGTGTACAGTTACTTCCTGCCCCCGTACAGCTTTCAGATCAGGGCAGGAGCACTGTACATGTTCTACGGCCTTTACCATGCACAGATTCCCTTGCCTAAGGAAAAGATTTGGATTGCTTTAAAGGACTGGGTGCACATTCAGAATTTTGTTTCGGAGGCTCTCAGCTGTCAGCACTTGGATGTTGTGTATGTCTACAGGAAGCTTGAGTCTGAGAAGGTGTTTTATTACACTGCCAT
>XM_022663912.1
AATGACTGAAAGCTGATTGGTTGGGATTTAGTGACTCTATGGATGGATTGAGGTGGTATTAAAGCTCCTGGTCAACGAGTCCGCAAAACTTCGTGTCTTCATGAACTGACTTTACTGAATTTAGTCACATAAATCTAACTGATACTTCAGCACAGGGTTATTGGGGTTTCTCACCACTGCCAGATTAATCATGACAACAGCTGCGGTGAAATTCTGCGATTATTTCTGGGTTCCGTTTAAATCCGACTGTGAGGAGCTGCTGGGCCGCTTCCAGCAAACAGACTCGGTGCGATATGAGGAGTTTGCAGCTATATGGAGAGACATGGACTTCTCCAGTGTGTTTTATGGAATGACCACACGCCTGGAGAAAAGAACTTTCACTCGCCTTGCCTTTGCCACGGTGTACAGTTACTTCCTGCCCCCGTACAGCTTTCAGATCAGGGCAGGAGCACTGTACATGTTCTACGGCCTTTACCATGCACAGATTCCCTTGCCTAAGGAAAAGATTTGGATTGCTTTAAAGGACTGGGTGCACATTCAGAATTTTGTTTCGGAGGCTCTCAGCTGTCAGCACTTGGATGTTGTGTATGTCTACAGGAAGCTTGAGTCTGAGAAGGTGTTTTATTACACTGCCATGCCCAAGCAGGTTCTCAAACCTTTACTTAaactctttcattttttttacaatatgtaAGAATTTACTGGCAGAAGTGCTCAGTATGCAAAGTTGAAATGCTGTTTTCTCCTGCAGGAAATCGCAAATGTTCAGAATCATTATGAAAAGCTTAAGCAGGGTTTGCCTGTGACCTCATCAATAAGTGTGACCACAGTCAATCTGACCAGCAAGCTTCAGGAATGCATCCTTGAGTTTCAGCATTggcaagaaaaaagaaaaGCAGCaaaaaacaagaagaacaaAGGCACCACTGTGAAAGAAGAGGAAGGCACTCAAGATACAGAATTTGAGTGTTCCATGAGAGCAGATCTACTTGCTTCTATAAAGTCAAAGTCATACAGCCGTACAACAAAGGCATCCAGATCCCGGCGACACAGACAGGTGGAGATGGACACCTCCGGCTCTGGAACAGACCATGCGCATGAGTATCTGGAAACTCGCAAAAACAGGCCACCTTCTCTTAAGGCCAGGACCTGTAAAAACATAATCACAATCAAAAAAGATGAAAATGATGATCGAACGCAACACTGGTTGCTGAGCTCGAGGGAAGAAGACAGAAAAGCATTGAAACGTCCGGTTCAGAGGAACAGATTCAAATTGTAAAAAGAGATGCAGCGTCAGTGTGAATgtagattttgtttttgtaatacCGCAAGCATTTACGGGCATTTTTGCATTTCCTACCTTATATTAATTAACTGACCATGCTCTCTGTGTCAACAATGCTCATAATGCAGCATTTGTTATCATGCTTTATTTTAAGAATGATTTTTGTGTTCTGTCATGTACACTTTATATGTGCTGTGTGGATTATTTGTTTGGGGTTTAAAAATCTTACATTCTTCCATGTTTTACATGAATCTTATAATTTTGAACATTCAtttataaataatgtta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39714 False 594 TUCP 0.46 4 60157538 60162024
XM_022663912.1 True 1573 mRNA 0.42 11 60149397 60162066

Neighbor

gene id symbol gene type direction distance location
LOC103033561 NA coding downstream 3477 60128047 ~ 60145920 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding downstream 25919 60097488 ~ 60123478 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding downstream 89797 59882140 ~ 60059600 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding downstream 318506 59792576 ~ 59830891 (-)
LOC107197813 NA coding downstream 445314 59700034 ~ 59704083 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 1274 60163340 ~ 60177354 (-)
LOC103034514 LOC108434990,LOC108258108 coding upstream 22628 60184694 ~ 60219056 (-)
LOC103035477 six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490 coding upstream 145869 60307935 ~ 60311646 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding upstream 440344 60602410 ~ 60607157 (-)
xrcc3 xrcc3 coding upstream 535220 60697286 ~ 60702253 (-)
G29608 NA non-coding downstream 57638 60074072 ~ 60091759 (-)
G29563 NA non-coding downstream 291058 59858066 ~ 59858339 (-)
G29559 NA non-coding downstream 296929 59852055 ~ 59852468 (-)
G29509 NA non-coding downstream 541551 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 571002 59576238 ~ 59578395 (-)
G29681 NA non-coding upstream 221937 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 225914 60387980 ~ 60388361 (-)
G29702 NA non-coding upstream 233583 60395649 ~ 60396246 (-)
G29707 NA non-coding upstream 298922 60460988 ~ 60463346 (-)
G29716 NA non-coding upstream 301910 60463976 ~ 60519797 (-)
snx17 snx17 other downstream 596487 59506926 ~ 59552910 (-)
G29478 NA other downstream 711099 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 1063511 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 1214608 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1974693 58159207 ~ 58174704 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 189206 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 206980 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1130810 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1669775 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2974885 63136951 ~ 63288108 (-)

Expression


Co-expression Network