G29317 (eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488)


Basic Information

Item Value
gene id G29317
gene name eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58932963 ~ 58934789 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39330
ACTGGCAAACATTCTTTAAtagttgaagaaaaaaaaaaaaaatacaaggaaGGGATAAAAGAAAGCAGTTCATCAAGAGGGCTTGtgaaatcactaaaataaggcGTTCTAGCAAAGTACTAAACTCAGGCCTACAGCGGAGGAGCAGAAATGATGTGAAGGCATGCATCTGACCACCAGCAGCTTTGCTGACCAGTGTCGAGAGGCAACTTCATTACTTTTAAATGGCATCGATATCAATGTCATCCTCTTCTTTTTCAGACTTCTCTGGTTTTGTTGCTTCCATCTTGAGCTCACGGGCAGAAGAGGAATACACCACCTCCACATtgtcttcatcttcctcttcttcttcctcactGCCCTCACTTTCCTCCTCTGCCTCCTTCAGCCATTTCACGAATGGTTCAGCCTTAGCATGGATCTCCTTGGCGAGTTCTTTGGAGACATACTTCTTAGAAACCTTTTCAGCCCATGCGAGTATGACATCCTCCTCCACCAGGTCCGAGTCGTACAGATCTTTGAGAACGACGGGGACACGGGGCAGCAGCTGACTCTGATGAAGCTTTACCAGGCACTCGAAACCACCCAAGAGGTACTTCTGAGCTTTTTTATCATTGTGGCAAAACTGGAGACAGACAAAgatagatactttttttttagaaaaatc

Function

symbol description
eif5 Predicted to enable GDP-dissociation inhibitor activity; eukaryotic initiation factor eIF2 binding activity; and translation initiation factor activity. Predicted to be involved in formation of cytoplasmic translation initiation complex and formation of translation preinitiation complex. Predicted to act upstream of or within translational initiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human EIF5 (eukaryotic translation initiation factor 5).

NR:

description
eukaryotic translation initiation factor 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39330 True 667 TUCP 0.44 3 58932963 58934789

Neighbor

gene id symbol gene type direction distance location
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 339037 58582728 ~ 58593926 (-)
LOC103032305 LOC103032305,LOC108444535 coding downstream 430432 58498747 ~ 58502531 (-)
LOC103032621 irf4,LOC108257893 coding downstream 437505 58485608 ~ 58495458 (-)
LOC103033450 foxq1 coding downstream 514117 58417381 ~ 58418846 (-)
LOC103033774 foxf2,LOC104946676 coding downstream 522382 58407436 ~ 58410581 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 103 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 12864 58947653 ~ 58952885 (-)
ccm2 ccm2 coding upstream 41873 58976662 ~ 58996762 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding upstream 424038 59358827 ~ 59434313 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding upstream 510722 59445511 ~ 59486743 (-)
G29291 NA non-coding downstream 44554 58888118 ~ 58888409 (-)
G29279 NA non-coding downstream 69468 58862851 ~ 58863495 (-)
G29270 NA non-coding downstream 81612 58848687 ~ 58851351 (-)
G29260 NA non-coding downstream 113110 58818634 ~ 58819853 (-)
G29255 NA non-coding downstream 151889 58780689 ~ 58781074 (-)
G29369 NA non-coding upstream 196752 59131541 ~ 59132137 (-)
G29370 NA non-coding upstream 198622 59133411 ~ 59133672 (-)
G29393 NA non-coding upstream 301708 59236497 ~ 59243835 (-)
G29417 NA non-coding upstream 390204 59324993 ~ 59325712 (-)
G29480 NA non-coding upstream 507990 59442779 ~ 59443002 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 758259 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 937487 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 1091645 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 2238128 56640351 ~ 56694835 (-)
G28536 NA other downstream 3116365 55815872 ~ 55816598 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 63752 58998541 ~ 59085886 (-)
G29478 NA other upstream 502811 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 572137 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1214608 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 1416483 60351272 ~ 60364744 (-)

Expression


Co-expression Network