LOC103032621 (irf4,LOC108257893)


Basic Information

Item Value
gene id LOC103032621
gene name irf4,LOC108257893
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58485608 ~ 58495458 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258172.3
GCCTTCGTAGAATCACCCGCGGAATCTGAATCCCCGCAGCGGCGCGCGCACACGAGCCCCGCCCCGCCCCCCTCCGCATGCAAAACCATTTAAGCAAAAGTGGCGCTCGGAGAGCTGAACCGCGCGACCCGCGTCACTCACCTCACTATCACACAGTTAGACTCACtatcactcacactctctctctctctctctcactcacactcacacagtgaGCACGGGCGAGAGCTGCGGCGAGGTCAGCGCGGGCGCGTGCACAGTTTCACTCACACTCTTCAGATGTGCTCGGACGGAGAGCGCGCCGCGACGGGCAGCTCGGGGAACGGGAAGCTGCGGCAGTGGCTGATCGAGCAGGTGGACACGGGTAAATACCCCGGGCTCGTGTGGGAGAACGACGAGAAGAGTGTGTTCAGGATCCCGTGGAAGCACGCGGGCAAACAGGACTACAACCGGGACGAGGACGCAGCTCTCTTCAAGGCCTGGGCTCTGTTTAAGGGTAAATATCGTGAGGGCATTGATAAACCGGACCCTCCCACGTGGAAGACGCGCCTCCGCTGTGCCCTCAACAAGAGCAACGACTTCGAGGAGCTGCTGGAGCGCAGCCAGCTAGACATCTCTGACCCATACAAGGTGTACAGGATTGTCCCTGAAGGGGCCAAGAAAGGATCCAGATCACTGGACAACTCTCCAACAAACACAAGTCCACCCAGTTACCCACTACACCCCTCCTATGGACCTTTGCAGACTCAGGTGTGTAACTTCATCTCTCCTGTGGAGAGGAGCTGGCGGGATTACCTCTCAGATAAGCCCCCAATATCAGACATCTCCTACGCCCAGAACCCTTACGCCCCCCGCTGGGATGGAGGATACCAGTTTAGTGGCTCATTCTACAGCTGCAGCACCTCAGAGGCTTTACCATCTGCATTTACAATGGACTCCAGCATGAAATCAGCAGAAGCCATGGCCCTTTCAGATTACCGTCTCCAGGTGGCAGTGTTTTTCCGGGATGCGCTGGTGCAGGAGTTGACTGTGAGCAATCCAGAAGGCTGTCTGCTGGGTGGGAGCAGAGAAGGACTGCCGTATGGAGCCTCTGAAGGGCCAGAGATAGTGGAGCTTCCTCAGATGGAGCGAGGTGCTGTAGAGAACGGTGTTCAGCTGTGGATGGCGCCAGATGGGCTTTACGCCCGGCGCCGCTGCCCCTGCAGGGTCTACTGTGAGGGAGGCCACACAGCAGCCAGCAAAACGAACaaactggagagagaacagacgtgcaaacttttggacacgcagctcttcatcaCAGAGTTACAGAGTTACGCTCTTCACACCCGTACTCTACCTGTTTCCCACGTTCTTCTGTTCTTTGAGGATGAAAGCACAGAACCACAGAGACCAAAGAGGACCCTTACAGTGCAGGTGGAACCCTTGTTTGCACGTCAGCTTGTCTACCTCACCCACCAGAGCAGCATGAACTACATTCGCAGTCACAACCTTTCCCCTTTGCCCCCGGAGCACGTCATTCCCTCCAGCCAGGACTTCCACAGGGTCATCACCCATCACCACAGCAACAGCCTGTAAAATCCATCCTGTGCCAAGAAAGCTAAAGATTTTTAGGACAGTGAATTGAGGAGCGGAGCCAAACAATCCAAAGGACGAGCCAAACAAGGACAAAGACAAACATGACGAGGTTACTGTTACAGGGCGACACTGAGAGACATTGTCTAAGGACACATGCACGCATGTGCAGAAGAGACAGAAGATACTGAAATTGCATACCTCCTTCTAGCATTCTTTTTCATGTCCTTGCATATCTGTGGATGATTTTTCACAACTGTATTAAGCCTGTATAAATTCAACATGGGATGTTTTTGTAATGGTGAAGCATCATTGACATTGTAATTTAGTTTAAGAAATGTTAGTTTAAGTCATGCCCAAGAAGCCAAGACTTCATCTCAGGGAGTTGTAATAAGACAgtattgtttttgtatgtttttctataattaagtttatttgatatttgaaCAGAAAGAAGCATTTCAAAGCATTTTTCTGCAACTGACTGAGAGATTCAATGTATATAGGCTGTAGGGTGTTGTTTGTGAGCATATTTCAGCAGACGGGAAAGTGTGGTTTAGAGACAGGAAGGTGATGGTTGGTAGACCCACAAACAGACTAATGACATCACACAGGAAGAGGTGTATTTACAACGTAAGACGTCTTTCTGATGATGGCCATGTTCCCAGGTAGGAAACAGTGTGTATCCAGATGTCACATCAATTACTCATGAAAGACTATTAATGtccacaaatacacacaaaaaaaagtttcaatcTTGAAACAGAGATGTAGCTCCCCAAATggtcaaaaagaaaaacatcagcacaaaatacaaaaatatgtcATCTTCTATCTTATGTATTTGACTTATGGAATAAGATTTGCTCTGACATGTTATtcaaatatttgtgtttaatttgaCTTTTGTGATTGAGTTTAATTGGTAAGTATGGGTGACAGCAGTAAAACACATAAAGTGTTAAATTCAGCTACATCTTTTAAAGCACAAGCTGGCATGTATTATTTGTATctttgtatgtatattttttttggggggggggtggtagAGTTCTTGATTGGAGAGATCCTCTTGATTGTATCTGGAACTTCAGATTTAAAACACTTGTATGAGAGAAATGCTGGTGTGTTGCTAAAGAGCTAAAACATTAGCAGCCAATGCTAATCAGTGTTTTGAGGGGATTAATAAAACACACTGGGAATAGAGACTGGGTCATTCATGTTCAGGAATGATGCAAAGAGTGTAATGATGCTATTTGAGTGCAgtattataaagaaaatcataTAAATTATGAGAATGTTTTCCTCACACCagagcatgtgtttgtgtgtgaccCTGGAAACAACTACACAAAAAGCCGTTTTGAATGTTTATAAGACATGCAATTTCTAATAaaggaaatacattttttttaa

Function

symbol description
irf4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cytokine production and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Biomarker of dilated cardiomyopathy and hematologic cancer (multiple).

NR:

description
PREDICTED: interferon regulatory factor 4 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258172.3 True 2991 mRNA 0.47 8 58485608 58495458

Neighbor

gene id symbol gene type direction distance location
LOC103033450 foxq1 coding downstream 66762 58417381 ~ 58418846 (-)
LOC103033774 foxf2,LOC104946676 coding downstream 75027 58407436 ~ 58410581 (-)
LOC103034096 foxc1 coding downstream 91250 58392121 ~ 58394358 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 211326 58266680 ~ 58274282 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 251334 58227206 ~ 58234274 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 3289 58498747 ~ 58502531 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 87270 58582728 ~ 58593926 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 439434 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 452195 58947653 ~ 58952885 (-)
ccm2 ccm2 coding upstream 481204 58976662 ~ 58996762 (-)
G29162 NA non-coding downstream 70175 58415164 ~ 58415433 (-)
G29131 gmds,LOC107711642 non-coding downstream 100155 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 221490 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 361043 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 428148 58002119 ~ 58057460 (-)
G29194 NA non-coding upstream 25179 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 173836 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 279057 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 283597 58779055 ~ 58779986 (-)
G29254 NA non-coding upstream 284746 58780204 ~ 58780550 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 310904 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 490132 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 644290 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1790773 56640351 ~ 56694835 (-)
G28536 NA other downstream 2669010 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 437505 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 503083 58998541 ~ 59085886 (-)
G29478 NA other upstream 942142 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1011468 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1653939 60149397 ~ 60162066 (-)

Expression


Co-expression Network