serpinb1 (serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390)


Basic Information

Item Value
gene id serpinb1
gene name serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58266680 ~ 58274282 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258182.3
acctttaaaggcTATGTAAGGCTGTGGCGTTGAGTGGGACaggtcagtggtcagtgagctGGAGTAAAGACCCCgctgagtgagtgagcgagagaatGGGTGGGTGTGACGCGCTTGGGCGTTCaccgctgctgctgttgttggttTAAAGTGCGCGTTCACGCGGCCCTGCACTTTCTTTCTGAGCCcgagcaccagcagcagcagcagcaggaaggaggAGCAGGACACGCCGGGAGCGCTCTGAAGATTGGATGACCATTGAAATCCACCATGGATAGTCTAGCCCGTGCTAATGGCAACTTTGCCCTGGACCTGTACCGGGCCTTGAGTGCCGACAACTCAGTGGGGAACATGTTCTTCTCACCTTTAAGCATCAGTGCAGCTCTCAGTATGGTCTACCTTGGATCAAGAGGGGCCACTGCTAAAGAAATGGCTGAGgtcATGTCTTTTACTTCAGTCCCTGATGTTCACACTCAGTTCAAGTCCCTCAACTCTGCAATCAACAGTCCCAAAGCCTCCTACATCCTCAGACTGGCCAACAGGCTGTACGGAGAGAAGACTTTCAAGTTCTTATCTGAGTTTGTGGAGTCTACTCAGAAGTTGTATGAAGCTGACCTGCAGGCTGTAGACTTCATTGGAGCATCAGATGAGTCACGGAAGCTCATCAACCACTGGGTAGAAGAGCAGACAGAAAATAAAATCAAAGATCTTCTGAAGCCAGGCATGGTCACAGGAATGACACGGCTCGCCCTAGTCAATGCTATCTACTTCAAAGGCAACTGGCTGCAGAGATTTAATGCTCAAGATACCAAAGAGATGCCCTTTAAGATAAATAAGaaTGAGAAGAAATCTGTTCAGATGATGTACCAGATGAAGAAGTTCCCCTTCAACTACATTCCTGACTACAATCTGCAAGTGCTAGAATTaccatatgtgcaaaaggagctCAGTATGTTGGTGCTTCTTCCTCCGGAGGCAGAGGATGGCTCTGATCCTCTCCAGAAGCTGGAGAGCGAGCTGACACTGGACAAGCTGCTTGATTGGACCAATCCAGACCACATGGACACAGGAACGGACATCATCGTCCATCTGCCAAAATTCAAGCTGGAGTGGGAGAGCTCTTTGGAGGGGTTGCTGAGCAAGATGGGCATGAGCTCTGTGTTCCAGCCCGGTGCTGCAGATTTAACAGGCATGAGCAGTGAGGGTGGGCTGTATTTGTCAGCAGTGGCCCATAAAGCCTTTGTGGAGGTTAATGAGGAAGGCACAGAGGCAGCAGCGGCCACAGCAGGCATCATCGCGTTCTGCATGCTGCGAGAAGAGCACTTCATGGCAGACCACCCCTTTTTGTTCTTCATTAGGCACAACCCCACTAACAGCATCCTCTTCTTTGGCAGGTTCAGAGGACCCACATAAAATGTAGTGTATTCTATTAGGCCTCAAAAAGAAATGCTTGTTTCATGTTCATAGTaaagatattaataaataaatgactacAGCTGCCTAAA

Function

symbol description
serpinb1 Predicted to enable peptidase inhibitor activity. Predicted to contribute to serine-type endopeptidase inhibitor activity. Predicted to be involved in negative regulation of endopeptidase activity and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within negative regulation of peptidase activity. Predicted to be active in extracellular space. Is expressed in gut; hatching gland; and lens. Orthologous to human SERPINB1 (serpin family B member 1).

NR:

description
leukocyte elastase inhibitor-like

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K23425 SERPINB1; leukocyte elastase inhibitor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258182.3 True 1508 mRNA 0.49 7 58266680 58274282

Neighbor

gene id symbol gene type direction distance location
LOC103036923 cdca4,LOC108411322,LOC102794764 coding downstream 32406 58227206 ~ 58234274 (-)
LOC103037877 LOC108411323 coding downstream 43735 58210877 ~ 58222945 (-)
LOC103038188 LOC108411316 coding downstream 68480 58192628 ~ 58198200 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 76951 58175809 ~ 58189729 (-)
chga chga coding downstream 116933 58136609 ~ 58149747 (-)
LOC103034096 foxc1 coding upstream 117839 58392121 ~ 58394358 (-)
LOC103033774 foxf2,LOC104946676 coding upstream 133154 58407436 ~ 58410581 (-)
LOC103033450 foxq1 coding upstream 143099 58417381 ~ 58418846 (-)
LOC103032621 irf4,LOC108257893 coding upstream 211326 58485608 ~ 58495458 (-)
LOC103032305 LOC103032305,LOC108444535 coding upstream 224465 58498747 ~ 58502531 (-)
LOC103035795 NA non-coding downstream 2562 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 142115 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 209220 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 272567 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 389935 57876271 ~ 57876745 (-)
G29131 gmds,LOC107711642 non-coding upstream 38532 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 140882 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 246355 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 395012 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 500233 58774515 ~ 58774951 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 91976 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 271204 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 425362 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1571845 56640351 ~ 56694835 (-)
G28536 NA other downstream 2450082 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 658681 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 724259 58998541 ~ 59085886 (-)
G29478 NA other upstream 1163318 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1232644 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1875115 60149397 ~ 60162066 (-)

Expression


Co-expression Network