LOC103032305 (LOC103032305,LOC108444535)


Basic Information

Item Value
gene id LOC103032305
gene name LOC103032305,LOC108444535
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58498747 ~ 58502531 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258171.3
TTTCACGTTTTGCATTAGAGGCGCGTCCTAAAACTCACATTCCTTCATGCAGTCTCATACATGACACCTGCCCTGCTGTTCACAACCCGAGTCACTGAAGATGACATGGCACCTGTAGGACGAGGCTTCAAAACCTTCAAATCTGTGCTGTTGCTGGTGAACCATTAAGAGGCAGCCATGAGAGACAGACTGATTGACCTGCAGGCTCTCTCTGAGTCCAGCAGTAATGTGGATGAGCTGGAATATGCAGAGTCTGTCTCAGACTCATTCAGCAACGTGGACTTGGAAGATGACCTCCAACAGCAGGCCGTCATTTTTGATAACAGTGCAGATATGGAGGCCGTGCTCGACGAGGCTCAGGAAACGAGGCGTGAGATCCAGCTCATTCGCCTGGACGTGAAGCGTCTCAGAGACCAGAACTCACGTATCCTCACTGAGCCAATTCGCACCAGCACCATAAAGCGAGACTCCAACGCCATCGCCGCAGACATCAAAACCCGTGGGGAAGACCTGCTGGGGCGCCTTCGCAAAATCGACTCTCACGCAAAAGAACTGGAGGAAGAGCACGGCATCAACTCAGCCGTTGCTAGAATCGCTAGAACCCAGTACGCCGGCCTGAGCAACAATTTTCGAGACGCCATGATGGAATACAATGAAACGGAGATGAGCCACAAGGAGACCTGCAAGATGCACATCCAGCGGCAGATGGAGATCGTGGGTCGAGAGGTGACGGGTGAGCAGATTGAGGAGATGCTGGAGACCGGCCAGTGGAACATCTTCAGTGAAAATGTGCTCCCAGAAGGAAAAACAGCACGATCGGCTCTCACCCAGATCGAAAGCAGACATCAGGACCTGATCGATTTGGAGAAGCGCATCAAGAGCGTCCATGAAGTGTTCCTGGATGTGGCCATGCTGGTGGAAGAGCAAGGGCCCATGATGGACTACATCTTCACCAATGTTCAGAAAACCGACGCCATGCTCGGTGAAGCCCTGATCAGACTCGGCAGAGCTAAGAGGCATGACAGCAACAATCCATTCAAGAAGATGTTCTGTAGCTGCTTCCCCTGCGTCAAGTGATTTATTTGGCCAAAAATCTGACTTTTGGTTTTAAGAATGACAATGTTGGAAACATTTTGTTCCTGTTTTTCACAGCCTTATCAGTTTGGCTCATTTTGCATCATGAACAGAGGTCATGAAGAATGCAGTCATACCTGGCAAGTCCTGAGTGTGGGCAAAAACTCTGTGTCCAATTATACATCAGTAATTGATTTATAGTTGTCACTTTAGAATCTGCAAcacatgtacatatatttaatatgcttGTGTAAATCATATGCTTGAACTTGAATTGTTTTCGCCATTATATATCATGAAATGTGGATTGTTGATTAAAGATggtactgtttctttttagacTGAGAGTTGCTTTATTCTATTTGGGAGATTCAGCAGAAGTAATGTACAGCATATAAGAGACAATAAACATTACAAATCCa

Function

NR:

description
syntaxin-11-like

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258171.3 True 1496 mRNA 0.47 2 58498747 58502531

Neighbor

gene id symbol gene type direction distance location
LOC103032621 irf4,LOC108257893 coding downstream 3289 58485608 ~ 58495458 (-)
LOC103033450 foxq1 coding downstream 79901 58417381 ~ 58418846 (-)
LOC103033774 foxf2,LOC104946676 coding downstream 88166 58407436 ~ 58410581 (-)
LOC103034096 foxc1 coding downstream 104389 58392121 ~ 58394358 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding downstream 224465 58266680 ~ 58274282 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 80197 58582728 ~ 58593926 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 432361 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 445122 58947653 ~ 58952885 (-)
ccm2 ccm2 coding upstream 474131 58976662 ~ 58996762 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding upstream 856296 59358827 ~ 59434313 (-)
G29162 NA non-coding downstream 83314 58415164 ~ 58415433 (-)
G29131 gmds,LOC107711642 non-coding downstream 113294 58312814 ~ 58385453 (-)
LOC103035795 NA non-coding downstream 234629 58263244 ~ 58264118 (-)
G29108 NA non-coding downstream 374182 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 441287 58002119 ~ 58057460 (-)
G29194 NA non-coding upstream 18106 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 166763 58669294 ~ 58705165 (-)
G29253 NA non-coding upstream 271984 58774515 ~ 58774951 (-)
G29252 NA non-coding upstream 276524 58779055 ~ 58779986 (-)
G29254 NA non-coding upstream 277673 58780204 ~ 58780550 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 324043 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 503271 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 657429 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1803912 56640351 ~ 56694835 (-)
G28536 NA other downstream 2682149 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 430432 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 496010 58998541 ~ 59085886 (-)
G29478 NA other upstream 935069 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1004395 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1646866 60149397 ~ 60162066 (-)

Expression


Co-expression Network