RNA id: XM_007258171.3


Basic Information

Item Value
RNA id XM_007258171.3
length 1496
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC103032305
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58498747 ~ 58502531 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTCACGTTTTGCATTAGAGGCGCGTCCTAAAACTCACATTCCTTCATGCAGTCTCATACATGACACCTGCCCTGCTGTTCACAACCCGAGTCACTGAAGATGACATGGCACCTGTAGGACGAGGCTTCAAAACCTTCAAATCTGTGCTGTTGCTGGTGAACCATTAAGAGGCAGCCATGAGAGACAGACTGATTGACCTGCAGGCTCTCTCTGAGTCCAGCAGTAATGTGGATGAGCTGGAATATGCAGAGTCTGTCTCAGACTCATTCAGCAACGTGGACTTGGAAGATGACCTCCAACAGCAGGCCGTCATTTTTGATAACAGTGCAGATATGGAGGCCGTGCTCGACGAGGCTCAGGAAACGAGGCGTGAGATCCAGCTCATTCGCCTGGACGTGAAGCGTCTCAGAGACCAGAACTCACGTATCCTCACTGAGCCAATTCGCACCAGCACCATAAAGCGAGACTCCAACGCCATCGCCGCAGACATCAAAACCCGTGGGGAAGACCTGCTGGGGCGCCTTCGCAAAATCGACTCTCACGCAAAAGAACTGGAGGAAGAGCACGGCATCAACTCAGCCGTTGCTAGAATCGCTAGAACCCAGTACGCCGGCCTGAGCAACAATTTTCGAGACGCCATGATGGAATACAATGAAACGGAGATGAGCCACAAGGAGACCTGCAAGATGCACATCCAGCGGCAGATGGAGATCGTGGGTCGAGAGGTGACGGGTGAGCAGATTGAGGAGATGCTGGAGACCGGCCAGTGGAACATCTTCAGTGAAAATGTGCTCCCAGAAGGAAAAACAGCACGATCGGCTCTCACCCAGATCGAAAGCAGACATCAGGACCTGATCGATTTGGAGAAGCGCATCAAGAGCGTCCATGAAGTGTTCCTGGATGTGGCCATGCTGGTGGAAGAGCAAGGGCCCATGATGGACTACATCTTCACCAATGTTCAGAAAACCGACGCCATGCTCGGTGAAGCCCTGATCAGACTCGGCAGAGCTAAGAGGCATGACAGCAACAATCCATTCAAGAAGATGTTCTGTAGCTGCTTCCCCTGCGTCAAGTGATTTATTTGGCCAAAAATCTGACTTTTGGTTTTAAGAATGACAATGTTGGAAACATTTTGTTCCTGTTTTTCACAGCCTTATCAGTTTGGCTCATTTTGCATCATGAACAGAGGTCATGAAGAATGCAGTCATACCTGGCAAGTCCTGAGTGTGGGCAAAAACTCTGTGTCCAATTATACATCAGTAATTGATTTATAGTTGTCACTTTAGAATCTGCAAcacatgtacatatatttaatatgcttGTGTAAATCATATGCTTGAACTTGAATTGTTTTCGCCATTATATATCATGAAATGTGGATTGTTGATTAAAGATggtactgtttctttttagacTGAGAGTTGCTTTATTCTATTTGGGAGATTCAGCAGAAGTAATGTACAGCATATAAGAGACAATAAACATTACAAATCCa

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU39146 lncRNA downstream 83314 58415164 ~ 58415433 (-) True G29162
TU39109 lncRNA downstream 113294 58312814 ~ 58385453 (-) False G29131
TU39108 lncRNA downstream 113294 58321038 ~ 58385453 (-) True G29131
TU39111 lncRNA downstream 167775 58321038 ~ 58330972 (-) False G29131
XR_002649731.1 lncRNA downstream 234629 58263244 ~ 58264118 (-) True LOC103035795
TU39182 lncRNA upstream 18106 58520637 ~ 58520956 (-) True G29194
TU39225 lncRNA upstream 166763 58669294 ~ 58705165 (-) True G29233
TU39246 lncRNA upstream 271984 58774515 ~ 58774951 (-) True G29253
TU39245 lncRNA upstream 276524 58779055 ~ 58779986 (-) True G29252
TU39247 lncRNA upstream 277673 58780204 ~ 58780550 (-) True G29254
XM_007258172.3 mRNA downstream 3289 58485608 ~ 58495458 (-) True LOC103032621
XM_007258175.3 mRNA downstream 79901 58417381 ~ 58418846 (-) True LOC103033450
XM_007258176.3 mRNA downstream 88166 58407436 ~ 58410581 (-) True LOC103033774
XM_007258177.3 mRNA downstream 104389 58392121 ~ 58394358 (-) True LOC103034096
XM_007258182.3 mRNA downstream 224465 58266680 ~ 58274282 (-) True serpinb1
XM_007258168.3 mRNA upstream 80197 58582728 ~ 58593926 (-) True LOC103031445
XM_022663672.1 mRNA upstream 432361 58934892 ~ 58942197 (-) True LOC103037326
XM_022663682.1 mRNA upstream 445122 58947653 ~ 58952885 (-) True LOC111189957
XM_007256627.3 mRNA upstream 474131 58976662 ~ 58996762 (-) True ccm2
XM_007256626.3 mRNA upstream 474131 58976662 ~ 58996757 (-) False ccm2
TU39086 other downstream 324043 58169321 ~ 58174704 (-) False LOC111189852
XR_452898.2 other downstream 1804622 56646027 ~ 56694125 (-) False LOC103031416
TU38322 other downstream 2682149 55815872 ~ 55816598 (-) True G28536
TU38270 other downstream 2891861 55602870 ~ 55606886 (-) True G28501
TU39330 other upstream 430432 58932963 ~ 58934789 (-) True G29317
TU39539 other upstream 935069 59437600 ~ 59438298 (-) True G29478
TU39714 other upstream 1655007 60157538 ~ 60162024 (-) False LOC103034188
XR_002649735.1 other upstream 1866515 60369046 ~ 60369614 (-) True LOC111191938
XR_002649101.1 other upstream 3330917 61833448 ~ 61887888 (-) False LOC103043586

Expression Profile