LOC111189852 (LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001)


Basic Information

Item Value
gene id LOC111189852
gene name LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58159207 ~ 58174704 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39086
GTGGCAACCTGCCTGCTAGCCTCCTGCCCTGTTAAAGGGGATGACTGGAGATGGGAATATGAAGAAGGTCTCAGCCATTACAGTGAGGAAGCCCTCAGAAAGGAGTATCCAGAGAAAGCCAGGCCTACAAGTTTTAAACACCCACTTTTCCGGTGTCCTGACATGACTGCTTCTACTTCCATACCCAACTCAATTGAAATGGTTAAGGCAGCAGATATCAAAGTGATTGCTGCTCTTGGAGATTCACTGACTACTGCTATTGGGGCGAATGCAACCACTGTCCTTGGAATACCTATTGAATTTCGTCATGTGTCATGGAGCATTGGCGGCTATGGAACTTTCCAAGATGTTATAACACTTGCGAACATCATCAGACTCTTCAACCCCAGTGTTGTGGGTCCTGCCCCAACCAAAACTGTCCATGGGACTCCGGCTCCGCTCAGTGAGACTGGCTTTAACCTCGCTGTGACAGGACACAACACCTT
>XM_022663552.1
TCCCTAAGGAGGTGCCTTCTAAAGAACATTTCCTGCAATGAGACTGATCCTGCTGTGCCTCAGGAGAGCCAAAGGGCAACACCtaattcattttttcatctaTTTATATACACAGTCCCTCTTTTCAGTGGAGAACTTCATCCACTACATGACCGTGTCCTTGGAGATGCTGATGAACGAGGTTCCTCGAATGATCGTGAATGTGGTTCAGATATTGCCCATGGAGACGCTACGTGAGGTGCAGAAACCCACTCCTGGGTGTCTGCTCCAAAGATCTTTCTGCTCTTGCTTGGTGAAACCAGCTACAGGCTCTGCTGACCTTAAGGAGCTGATTGAGATCAACCTTCAATTCCAGaatgcTCTGGAGCAGCTTCTCTACAGCGACCGTTTCTTTAAGAGTGACTTTTCTGTCGTTCTTCAGCCTTTTCTGAAATTTGCTGACCCTCCACGGCACCCTAATGGAAAGATTGATATGAGCTTCTTCACTCCAGACTGTTTCCACTTCACCATGAAAGGACATGAGGAGCTAGCAAAGGGTCTTTGGAACAACATGTTCCAGCCTGAAGGGGAGAAGCTTATGGTTGAGAGTTTTTCCACTCCTATTCAGATCATGTGTCCTCCTGTGGACCACCCTTACATCTACACTAAACCCCACGCTGCATCAGGAGGTCCGCCTGTATCAGGAGGTCCAAGATTGGCCACAGTTCTCTCCACGATGACTGCTTTGACTTTCCTTCTCTTCTGGTGGGCCAGGAGCATGGCATCTGTATAGAAATTGTACATGTTTGGTGTGTTGCTTCACTGCTATCCACAAACCACCAGCAATGCTTGTATTTTCTACCACTTTTCGACTAAACTCTCAAAGGTTTAAAGCCCAACAACAATACTGAATTATATTTAGGGCCTAGAAAAGGGAGAACAAGCTAAAATGTGTCATTGCAAGTAAGAAACGATAATGAGTAAAATTGGCGGAATTACATGAAAGGACTGTTTCATTCACTTATCAGATTGCAATGGTAAAACAGCACTGCCAGCATGAGAACATCATGTACACTAACCTGATGACCCTTTCtgatccatccatcatccatcgaACCGGATATCCACCATTTCAGAGCCTGAATAGAGCAGCAGCAGGTGCAAGCCACATTTAGCCcaggctaatgctgctgtaatTGATTTAGCTAGGAAAGGTAATTGTGTGAGCCATCTCGGGCTTGTCTGGACAAAAACGGCCTGAGGTTAGCCTGAAAACACATTATGGGTGCAAGGTCAAAGGAGCAAACTGTTTGGAGAGAAGGGTATTGTGCCTTTTCAGATGGTTGTTAAGTGCAACCCGTTTGAGAGAGATACCTAATGCCTGTAGTAATGAGATAATCGCTTTTGGACGTCGCAACCTGAGACATGCTTTTAGTCTCTTCAAATAAAGCTTTTGGAAAGATGTGCACATGCATCTGTGCTTTTATGCTGTTGTTAGGAGCCAGACTATTCTTGAACTGGGAACAGGAGGCTGTGTTAAGTGTTAACAATGATGGTTTGTATGTAGACAAGAGCTTTTGAGTGAAATCAGGATTGATCATATGAGTTTATATAACTGGAATCTTCACAGGTGCACAGATTGTATTCATAGCAAGGCTGTTTATGTCAGACATGGTTTCCTATTGCAAATATGTCCATGCAGGTGTGTTCCATAATAAGCAGTAGGTTCATTCATCACCTTCACAGCCGGTGCTAGAGCAAACAGCATTATGGGCATTTGATACAGGGCAAACATGAAGGCAGTGCTGACGCTAACCCGCTTTTATTGTGTCCTTGATTAGTATCTGGTCAGGTTGTGAAATAGGAAATTTGAGACTGGACAAATATATGAACAACTGCATctttattaaaacagtttaaaatctGA
>XM_022663555.1
aaacaacacaaatatttataatataaaacaaatatttcttTTGTCCACAATTCGATTATGATCTTGCTTTGTGAACATGTTTATCCTGAAGCTTAAATAGGTTGTGGAATGTTTCTTGCAGCATTGGCGGCTATGGAACTTTCCAAGATGTTATAACACTTGCGAACATCATCAGACTCTTCAACCCCAGTGTTGTGGGTCCTGCCCCAACCAAAACTGTCCATGGGACTCCGGCTCCGCTCAGTGAGACTGGCTTTAACCTCGCTGTGACAGGACACAACACCTTtaATCTTCCTGGACAAACCAGACATTTGATTGACACTCTAAAAACATACGAGGGCGTTAACTTTGACGAGGACTGGAAACTGCTGACCATTCTCATCGGCATGAATGACATCTGCGATTATTGTAAGGACAAGTCCCTCTTTTCAGTGGAGAACTTCATCCACTACATGACCGTGTCCTTGGAGATGCTGATGAACGAGGTTCCTCGAATGATCGTGAATGTGGTTCAGATATTGCCCATGGAGACGCTACGTGAGGTGCAGAAACCCACTCCTGGGTGTCTGCTCCAAAGATCTTTCTGCTCTTGCTTGGTGAAACCAGCTACAGGCTCTGCTGACCTTAAGGAGCTGATTGAGATCAACCTTCAATTCCAGaatgcTCTGGAGCAGCTTCTCTACAGCGACCGTTTCTTTAAGAGTGACTTTTCTGTCGTTCTTCAGCCTTTTCTGAAATTTGCTGACCCTCCACGGCACCCTAATGGAAAGATTGATATGAGCTTCTTCACTCCAGACTGTTTCCACTTCACCATGAAAGGACATGAGGAGCTAGCAAAGGGTCTTTGGAACAACATGTTCCAGCCTGAAGGGGAGAAGCTTATGGTTGAGAGTTTTTCCACTCCTATTCAGATCATGTGTCCTCCTGTGGACCACCCTTACATCTACACTAAACCCCACGCTGCATCAGGAGGTCCGCCTGTATCAGGAGGTCCAAGATTGGCCACAGTTCTCTCCACGATGACTGCTTTGACTTTCCTTCTCTTCTGGTGGGCCAGGAGCATGGCATCTGTATAGAAATTGTACATGTTTGGTGTGTTGCTTCACTGCTATCCACAAACCACCAGCAATGCTTGTATTTTCTACCACTTTTCGACTAAACTCTCAAAGGTTTAAAGCCCAACAACAATACTGAATTATATTTAGGGCCTAGAAAAGGGAGAACAAGCTAAAATGTGTCATTGCAAGTAAGAAACGATAATGAGTAAAATTGGCGGAATTACATGAAAGGACTGTTTCATTCACTTATCAGATTGCAATGGTAAAACAGCACTGCCAGCATGAGAACATCATGTACACTAACCTGATGACCCTTTCtgatccatccatcatccatcgaACCGGATATCCACCATTTCAGAGCCTGAATAGAGCAGCAGCAGGTGCAAGCCACATTTAGCCcaggctaatgctgctgtaatTGATTTAGCTAGGAAAGGTAATTGTGTGAGCCATCTCGGGCTTGTCTGGACAAAAACGGCCTGAGGTTAGCCTGAAAACACATTATGGGTGCAAGGTCAAAGGAGCAAACTGTTTGGAGAGAAGGGTATTGTGCCTTTTCAGATGGTTGTTAAGTGCAACCCGTTTGAGAGAGATACCTAATGCCTGTAGTAATGAGATAATCGCTTTTGGACGTCGCAACCTGAGACATGCTTTTAGTCTCTTCAAATAAAGCTTTTGGAAAGATGTGCACATGCATCTGTGCTTTTATGCTGTTGTTAGGAGCCAGACTATTCTTGAACTGGGAACAGGAGGCTGTGTTAAGTGTTAACAATGATGGTTTGTATGTAGACAAGAGCTTTTGAGTGAAATCAGGATTGATCATATGAGTTTATATAACTGGAATCTTCACAGGTGCACAGATTGTATTCATAGCAAGGCTGTTTATGTCAGACATGGTTTCCTATTGCAAATATGTCCATGCAGGTGTGTTCCATAATAAGCAGTAGGTTCATTCATCACCTTCACAGCCGGTGCTAGAGCAAACAGCATTATGGGCATTTGATACAGGGCAAACATGAAGGCAGTGCTGACGCTAACCCGCTTTTATTGTGTCCTTGATTAGTATCTGGTCAGGTTGTGAAATAGGAAATTTGAGACTGGACAAATATATGAACAACTGCATctttattaaaacagtttaaaatctGA

Function

NR:

description
PREDICTED: phospholipase B1, membrane-associated-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39086 False 485 TUCP 0.49 7 58169321 58174704
XM_022663552.1 False 1906 mRNA 0.44 7 58159207 58165281
XM_022663555.1 True 2210 mRNA 0.43 11 58159207 58169875

Neighbor

gene id symbol gene type direction distance location
chga chga coding downstream 9460 58136609 ~ 58149747 (-)
tmem251 tmem251 coding downstream 75724 58081670 ~ 58083483 (-)
LOC103040793 LOC108411326,LOC107721373,LOC108257828,LOC107659193 coding downstream 82642 58060823 ~ 58076565 (-)
LOC111194372 NA coding downstream 406064 57685492 ~ 57753143 (-)
LOC103043676 LOC108424526 coding downstream 504127 57607770 ~ 57655080 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding upstream 1105 58175809 ~ 58189729 (-)
LOC103038188 LOC108411316 coding upstream 17924 58192628 ~ 58198200 (-)
LOC103037877 LOC108411323 coding upstream 36173 58210877 ~ 58222945 (-)
LOC103036923 cdca4,LOC108411322,LOC102794764 coding upstream 52502 58227206 ~ 58234274 (-)
serpinb1 serpinb1,LOC107659205,LOC107602456,LOC107711644,LOC107665390 coding upstream 91976 58266680 ~ 58274282 (-)
G29108 NA non-coding downstream 34642 58122464 ~ 58124565 (-)
G29085 NA non-coding downstream 101747 58002119 ~ 58057460 (-)
LOC111189816 NA non-coding downstream 165094 57992403 ~ 57994113 (-)
G28997 NA non-coding downstream 282462 57876271 ~ 57876745 (-)
LOC111189782 NA non-coding downstream 305449 57849734 ~ 57853758 (-)
LOC103035795 NA non-coding upstream 88540 58263244 ~ 58264118 (-)
G29131 gmds,LOC107711642 non-coding upstream 138110 58312814 ~ 58385453 (-)
G29162 NA non-coding upstream 240460 58415164 ~ 58415433 (-)
G29194 NA non-coding upstream 345933 58520637 ~ 58520956 (-)
G29233 NA non-coding upstream 494590 58669294 ~ 58705165 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 163731 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 317889 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 1464372 56640351 ~ 56694835 (-)
G28536 NA other downstream 2342609 55815872 ~ 55816598 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 2517832 55634532 ~ 55641375 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 758259 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 823837 58998541 ~ 59085886 (-)
G29478 NA other upstream 1262896 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 1332222 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1974693 60149397 ~ 60162066 (-)

Expression


Co-expression Network