LOC103026850 (LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452)


Basic Information

Item Value
gene id LOC103026850
gene name LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59358827 ~ 59434313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256640.3
agaggagaggagaggggggGTTAACAGcgcagtatctctctctcagcagaGCAGCTCTCCctccatccacacacacaaccaaccaaccagccccACACACTGCTCCTCTCCCCCTCACACTCCCACTACATCACTCCAGCACGAgcacgaggaggaggaggaccaGCCCACCTGACCACACGGCGAGCGCACCTCCACAGCATGGACGCGCTCAAATCCGCCGGCAGAGCCATCATCAAAAGTCCGGGAGTCCCGCGGCACACATGGGGAACCACCAAGCACGAGAagcttccAGAGAATTGGACGGACACTAAAGAGACCCTTCTGGAGGGGATGGTTTTTAATGTGAAATACCTGGGCATGACACTGGTGGGCCAGCCAAAAGGAGAGGACATGGCAGCTGCAGCTATCCGGAGGATTGTCACCACGGCTCGTGCCAGTGCGAAGAAGTTCCGGAAGGTGACCCTCAATGTCTCTCCTAAAGGAATCATACTTACAGACACAGAGACCAGCGACCTTATTGAGAACGTGTCTATTTACAGAATTTCCTACTGCACAGCTGATAAAACTCAGGATAAGGTGTTTGCCTACGTCTCACAGAGTCAGTTCAATGAAACTCTGGAGTGCCATGCCTTCCTCTGCCAAAAGAAGAAAATCGCCCAAGCCGTCACCCTCACCGTAGCACAGGCATTTAAAGTGGCTCTGGACCTCTGGGAGATTGCCCAGGAAGaCAAAACTAAGAAGGCTCACACATGCTGTTCAGGTGGCGTCCCTCAGGTGGAAATAAAACCTCACTGTGATTCAGAGGCTGAGAAGACTCAGGCACTGATGGAGCACAAGCTGAGGAAACCCTTCTTTACATCTTCTATCCATTCTACATCTCCACGCAGTAACCCTACCCGGAGACGGCCTATCAAACACGACTCCTGGGATGTGGAAGATGGCCTCGATGACACGTTTTCAAGCAATATGGAGGTGGAGGAGATGGACACAGACTGGCAGAGTCCCGCTCCAGAACGGTGTCTGAGGATGCAGCTGTGAGCCCTCTGAAGAGGACTTCACGTCTCTCAGCGGTGAAGAGTCtgattaaacacaaacacatacacaaactcacacactcGCCAGTCTGCTGACTCTCCAGTCTGCTGTCAACAACCCTCATGCCACACTTTACTACTTTACAGAAAGTACAAAGAACTCTTTACAAATTGCCACACTTCTGGAGTGCAGAGAAGACCACTGCCCTTTATCTCTGGACTGAAAGTATAGGAGATGCATTATTCCCtaagatcaaatatatatagagagagaatatttatatgtttcagtaaatgTCCACAACAAAAGAGCTCCCTACATGTGTTCTCTTCTTCTGACAGTCAAAGCCTAACCAGCGAACTGTGTTCTCCCATCTCAAGCTCAGATCTGTTCTGCAGGCACTCCGCatcaaagtacttttttttggctcttaCATTTCCCATAATCTCTTAAGACCCTGGAGCTGCCGTTGTACTGCAAAACGCCCTTTTTGTTAAGCCCATATTGATCCAGACAAAAATTGCACAGGTCTTATCAAAACACGAAGATGAGCAGACTGCAGAGATCTgagctcacacacactttatttgAGCACAAAGAtctttgtttggttttgaagtaaaaagttaaagttCAACCATATTTGCAATGTATATACAGCACAcccttcattaaaaaataaataaataataatagctgcacccagaaggaatcaacaGACAGATATGAGACTGTAGTGGGTAGTTATGATATCGTAGGACAGGATTTTGAAAATGAGTTTGAAAGTGAATTAGGCAAGGCTCCAGGAAGCAGGATTGTCTTTTCGAAGTTGTATGCATCACACCAGCCAAGCAGATATTACCTTAGCACACTGTTGGTGGAAGTGGATAATTAGTGGTGACTTCCATGAGTCATCCTGTTAGTGCCAACACCATTGGCAGACGGATGCACAGTGCAGGACTACCTCTAgaccagacatcccaagtttcaaaaatattttttctgggAGGCACCCCTGCACCTGCACTTGGACCTGGAGGGTCACTACAgagtcagaactaactgtggtataatatttgaatatttctgcatgggatggattattgcaggacacTATTAGGACTTTATACAACCCATGAAATTCTTAATtcattatcatttattgttcctggtaacctttatcttccttctgaacAGGATTGCAATCTGACATTTCCTTCTGTGtgcaactatttatttatttttattatttttgatgatgatgatgatgatgataatgatgagggtatttaa
>XM_007256641.3
gaggagaggagaggggggGTTAACAGcgcagtatctctctctcagcagaGCAGCTCTCCctccatccacacacacaaccaaccaaccagccccACACACTGCTCCTCTCCCCCTCACACTCCCACTACATCACTCCAGCACGAgcacgaggaggaggaggaccaGCCCACCTGACCACACGGCGAGCGCACCTCCACAGCATGGACGCGCTCAAATCCGCCGGCAGAGCCATCATCAAAAGTCCGGGAGTCCCGCGGCACACATGGGGAACCACCAAGCACGAGAagcttccAGAGAATTGGACGGACACTAAAGAGACCCTTCTGGAGGGGATGGTTTTTAATGTGAAATACCTGGGCATGACACTGGTGGGCCAGCCAAAAGGAGAGGACATGGCAGCTGCAGCTATCCGGAGGATTGTCACCACGGCTCGTGCCAGTGCGAAGAAGTTCCGGAAGGTGACCCTCAATGTCTCTCCTAAAGGAATCATACTTACAGACACAGAGACCAGCGACCTTATTGAGAACGTGTCTATTTACAGAATTTCCTACTGCACAGCTGATAAAACTCAGGATAAGGTGTTTGCCTACGTCTCACAGAGTCAGTTCAATGAAACTCTGGAGTGCCATGCCTTCCTCTGCCAAAAGAAGAAAATCGCCCAAGCCGTCACCCTCACCGTAGCACAGGCATTTAAAGTGGCTCTGGACCTCTGGGAGATTGCCCAGGAAGaCAAAACTAAGAAGGCTCACACATGCTGTTCAGGTGGCGTCCCTCAGGTGGAAATAAAACCTCACTGTGATTCAGAGGCTGAGAAGACTCAGGCACTGATGGAGCACAAGCTGAGGAAACCCTTCTTTACATCTTCTATCCATTCTACATCTCCACGCAGTAACCCTACCCGGAGACGGCCTATCAAACACGACTCCTGGGATGTGGAAGATGGCCTCGATGACACGTTTTCAAGCAATATGGAGGTGGAGGAGATGGACACAGGTAAGTGAgACTGGCAGAGTCCCGCTCCAGAACGGTGTCTGAGGATGCAGCTGTGAGCCCTCTGAAGAGGACTTCACGTCTCTCAGCGGTGAAGAGTCtgattaaacacaaacacatacacaaactcacacactcGCCAGTCTGCTGACTCTCCAGTCTGCTGTCAACAACCCTCATGCCACACTTTACTACTTTACAGAAAGTACAAAGAACTCTTTACAAATTGCCACACTTCTGGAGTGCAGAGAAGACCACTGCCCTTTATCTCTGGACTGAAAGTATAGGAGATGCATTATTCCCtaagatcaaatatatatagagagagaatatttatatgtttcagtaaatgTCCACAACAAAAGAGCTCCCTACATGTGTTCTCTTCTTCTGACAGTCAAAGCCTAACCAGCGAACTGTGTTCTCCCATCTCAAGCTCAGATCTGTTCTGCAGGCACTCCGCatcaaagtacttttttttggctcttaCATTTCCCATAATCTCTTAAGACCCTGGAGCTGCCGTTGTACTGCAAAACGCCCTTTTTGTTAAGCCCATATTGATCCAGACAAAAATTGCACAGGTCTTATCAAAACACGAAGATGAGCAGACTGCAGAGATCTgagctcacacacactttatttgAGCACAAAGAtctttgtttggttttgaagtaaaaagttaaagttCAACCATATTTGCAATGTATATACAGCACAcccttcattaaaaaataaataaataataatagctgcacccagaaggaatcaacaGACAGATATGAGACTGTAGTGGGTAGTTATGATATCGTAGGACAGGATTTTGAAAATGAGTTTGAAAGTGAATTAGGCAAGGCTCCAGGAAGCAGGATTGTCTTTTCGAAGTTGTATGCATCACACCAGCCAAGCAGATATTACCTTAGCACACTGTTGGTGGAAGTGGATAATTAGTGGTGACTTCCATGAGTCATCCTGTTAGTGCCAACACCATTGGCAGACGGATGCACAGTGCAGGACTACCTCTAgaccagacatcccaagtttcaaaaatattttttctgggAGGCACCCCTGCACCTGCACTTGGACCTGGAGGGTCACTACAgagtcagaactaactgtggtataatatttgaatatttctgcatgggatggattattgcaggacacTATTAGGACTTTATACAACCCATGAAATTCTTAATtcattatcatttattgttcctggtaacctttatcttccttctgaacAGGATTGCAATCTGACATTTCCTTCTGTGtgcaactatttatttatttttattatttttgatgatgatgatgatgatgataatgatgagggtatttaa

Function

NR:

description
PREDICTED: low density lipoprotein receptor adapter protein 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256640.3 False 2331 mRNA 0.46 10 59358827 59434313
XM_007256641.3 True 2339 mRNA 0.46 10 59358827 59434312

Neighbor

gene id symbol gene type direction distance location
ccm2 ccm2 coding downstream 362065 58976662 ~ 58996762 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding downstream 405942 58947653 ~ 58952885 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding downstream 416630 58934892 ~ 58942197 (-)
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 764901 58582728 ~ 58593926 (-)
LOC103032305 LOC103032305,LOC108444535 coding downstream 856296 58498747 ~ 58502531 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding upstream 11198 59445511 ~ 59486743 (-)
eif2b4 eif2b4 coding upstream 128516 59562829 ~ 59573611 (-)
LOC103030505 LOC103030505,LOC108434978 coding upstream 165107 59599420 ~ 59608991 (-)
LOC107197813 NA coding upstream 265721 59700034 ~ 59704083 (-)
LOC103031863 LOC108434997,LOC108258133,LOC105920313 coding upstream 358263 59792576 ~ 59830891 (-)
G29417 NA non-coding downstream 33115 59324993 ~ 59325712 (-)
G29393 NA non-coding downstream 114992 59236497 ~ 59243835 (-)
G29370 NA non-coding downstream 225155 59133411 ~ 59133672 (-)
G29369 NA non-coding downstream 226690 59131541 ~ 59132137 (-)
G29291 NA non-coding downstream 470418 58888118 ~ 58888409 (-)
G29480 NA non-coding upstream 8466 59442779 ~ 59443002 (-)
G29492 NA non-coding upstream 120018 59554331 ~ 59559664 (-)
G29494 NA non-coding upstream 140015 59574328 ~ 59574536 (-)
LOC111190079 NA non-coding upstream 141925 59576238 ~ 59578395 (-)
G29509 NA non-coding upstream 172862 59607175 ~ 59607846 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 272941 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 424038 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1184123 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 1363351 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 1517509 57812262 ~ 57841318 (-)
G29478 NA other upstream 3287 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 72613 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 715084 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 916959 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 934733 60369046 ~ 60369614 (-)

Expression


Co-expression Network