LOC103031863 (LOC108434997,LOC108258133,LOC105920313)


Basic Information

Item Value
gene id LOC103031863
gene name LOC108434997,LOC108258133,LOC105920313
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 59792576 ~ 59830891 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022663890.1
GTGGCTTAAAGCAGCACCTCCATCTAcctggagctgcaggagctgcaggGTGTGGATCAGCTCTACGGATATGAGCCCGTCTGGAGCGGAGAGCCTACTTTGCAAGGCCTAAGGAGGGTGTGATGGTGTGCTTTTTACTGTAAGAGGTTTTCAAGATGTCAGGTGATACCACCACACTGTCCTGGAAGGTGCCTACTCCAGGCTCCGAAGGACCAAAGAGCCCTGTGTTTGGCTTAGCTGGTGAGGGGGGACCTGTGAAGATCCTCAAAGTGTGTTTCTGCAGCACCAACAACCTGAAGAACTTCAAACTGGTCAAGTGTGACAGTTCCTGGCAGATAAGGGCCATTATCCAGTCTATTCTGATTAGTGGTCGTTTGGGTCCTAATGTGCAGAATGGGCCGTGCTTTGGGTTAAGGCTCAAACATCTGAAGTCTGAGGAGCACTACTGGCTGCACCCAGACCTGACTATAGGAGACGTGGAGCAGCGCTACGAGAGACTTCATGTGGAGGCAGAGTGGAGATATGACTTGAGAATTCGCTACATACCAGCTAATTACCTGGAGACGTTTAAAGAAGACAGAACTTCACTGTTATATCTGTACCATCAGGTTCGCAATGACTACATGCAACATTATGCCAGTAAGGTCAGTGAAGGCATGGCACTGCAGCTGGGCTGTTTGGAGATCAGGAGATTTTACAAAGACATGAACGCCAAAGGCCTTGAGAAGAAGTCTAATTTTGAGCTGCTAGAGAAAGACGTTGGTCTGAACCTTTTCTTTCCACAGAAACTGATAGACAGTAACAAGCCCAAACAGCTGAGAAAGATGATCCAGCAGACCTTCCTGCAGTACGGCACACTCAAAGAGGAAGAGTGCATTCTCAAGTTCTTTAAGACCTTTGGTGAATTCATTAACTTTAATGAAGAGGTTTTCCCCTGTGAACTAGTGCAAAGTTGGAGTCTATCAGTGGATTTAGTTATTGGAGCAAGAGGGATTCGGCAGCGTGCACACTCCGATTCATCGaTGCTCTGTCTGGCAGAATTTAAACAGATCCGAAGTATCAAGAGCTCTGCGCAAGGTGATGGCAAAGCCCTGTTACAGGTCGACATCAAAGGAGCCAAACAGCCTCTCTCCGTCAATGTGCCGACTCTGGCAATGGCGGAAAACATGGCGGATTTGATTGATGGATACTGCCGGCTAGAGAGCAACACAGATTCATCACTCATATCTCGGCCAAATAATAAAGGTCCTGAGATTCGGAGTGCTCTTCCTGCAATCCCTTCAGGacagcTGCCTGAACCCTTTAAAGACACTGAAAGACTCAGCAGGAACTCTGATATATACTGTGAAATCATGGATGAAAAACCGCCCCCTCCTGTACAGAAATTTGGAATCCCTAGGAAGGCCATTGTCTTGGGCCGGATCTTGGGTGCAGGTTTTTTTGGGGAAGTCTATGAAGGAGTTTATAAAAAAGGGAATGGTGAGAAGATCAATGTGGCTGTGAAAACCTGTAAAGACTGCTCACCCGACGTCATGGAGAAGTTTATGAGTGAAGCAGtgatcatgaaaaacctggaccACCCTCATATAGTGAGTTTGATAGGAATAATTGAGGAAAGCCCAGTATGGATCATCATGGAGCTCTACCAGCATGGCGAGCTCGGGAACTACTTGACCCAAAACAAGAACACTTTAACCAATGTCACATTAGTGCTGTTCAGCTTGCAGATTTGCAAAGCTTTGGTCTATTTACAAGGGAAGAACATGGTACACAGggaCATTGCTGTGAGAAACGTGCTTGTTGCTACACCAGAGTGTGTGAAGCTGGGTGACTTTGGCCTGTCCAGATACATAGAGAATGAGGAGTATTATAAAGCCTCTATTACTCGATTACCCATCAAATGGATGGCCCCTGAATCCATCAACTTCCGCCGCTTTACCACAGCCAGCGATGTGTGGATGTTTGCGGTGTGCATGTGGGAGATGATGAGTTGTGGTCAGCAACCCTTCTTCTGGCTGGAGAATCGTGATGTGATTAACCAGCTGGAGCAGGGCATCAGACTGCCCAAGCCAGAGCTGTGCCCTCCTGCCCTCTATTCCCTCATGACCTGCTGCTGGAGCTACGACCCCGGCGAGAGACCCAGCTTCACCGAGCTCGTCTGCAGAATCAGTGATGTTCACACAATGGAGAAGGAGCTGGAggtggagaaggagagagacagagctcgCTCCAACAAGTTCCTGGAGCCCAAGTTCACCGAGCCTCCTCCAAAGCCTTCAAGACTAAACCCTGGGCGCTTTGGGAACACCCTCAGCATTGGTCTTCATATTCAGCTGAATGAAGCATTATGTGCCAGTTCTCCAGATCTGGCCAGTCCTTGTGATTATCAGTCTCCCATAGACTCCACCAACGCCCTGACTGTTCCTACCGTGGCCGCTCGTCGCCTCAGTCTGGGAgAGGAGTTCAGCGTGGGGCCGTCCAGCATGGAGGACGCACAGCGCCTGTGGCAGGCAGAGAAGCAGCGGATGCAGGACACcataaagaaacagaaagaggacATGGTGGATGATAAACATTGGCTGGACAAAGAGGAGAAACTTTTGGACCCCAAGATTAAAGAGAAGACAGTTGTAGAGCTGCCGCCAGAGCCTGCTCAGGCTGACCCTCAGATGGCTCCTGCAAAGCCCCCGAGAATTTCAGTGCAGcccGCCCCCACAGCTGAGCTGGACCGCTCTGAGGACAAGGTGTACCAGTGTGTCATGGACTTGGTTAAAGTGGTGGTGCAGCTGAAAAACGATGTGAACACACTGCCATCTTCTGAGTATATAAGCATAGTCAAGTCAGTTGGGATGTCATTGAGGGATTTGATTCACAGTGTAGATGATATCCTTCCAACTCTCCATGGGTCTGTAAGAACAGAGaTCGAGGGCACGCAGAAGCTGCTGAATAAAGACATGGCCGAGCTGATCAGTAAGATGCGTCTGGCTCAGCAGAACTCCATCACCTCTCTAAAGGAGGAGTGCAAGAAGCAGATGCTGGCGGCGGCTCACACGCTGGCCATGGACGCCAAGAACCTGCTGGATGCTGTGGACCAGGCACGGGTACGCGCCAACCTGGCCAAGCCCAAACCTGAGGATGCAGACACTGCAGACACTGACTAGAGAATACAGAGCCTGCCACATTTTAAACCAAGGACCTTGCTGACTCATAAAGTTACTATTCTATATCTGGATAACTTGGAGGGCCAGTTTCCTGGATACTGATTATGCCTGAAATACATTCCAGCCTGTGGAGCTCTTTCATTTAGTATCCATTTTATTCTTGGACAGAGATGCTCAGCCTTGTCCCTGGAGACACACTCTCCCACTGAGTTTAGCTCTAATGAACTCAAAGGACTCAAggaatatattaaagttaaagttggatgtgatattttatattagGAAATAAAATTTGCATTTGGACAGATTTTTTTGGTGCAGTGCTGATTTAGACTGAATCTACAATGCAGTCTCTGGACAAAGCAGTTTTGTAAGATCTAACATGACCTTGAtaattttatgtaattgttcaggACAGGACTGTTCAGTGGTCACCCTATTTCAATACTCAATAttggtctatatatatattgtctaaGGGCAGCAGATGTGTGTCAGATAAATGTATAAacctttttgtgttttgtatacAGATGCATGAAATGACATGCTTATTTTTGGAGCTACGATTTTAGCATAAAAATGAGGACATCCTTACAGATCACACTGTTGCGTTCCTCAGCTGTGCTCATGTCCTCATGTTGTCTGACAGTGAACTCTAAAGCAGTgtcaataaaaaatgtattaaataaaaaaaaaaaaatctgtctgagaCT

Function

NR:

description
PREDICTED: protein-tyrosine kinase 2-beta-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007172 signal complex assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005524 ATP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05871 PTK2B, FAK2; focal adhesion kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022663890.1 True 3877 mRNA 0.47 31 59792576 59830891

Neighbor

gene id symbol gene type direction distance location
LOC107197813 NA coding downstream 88493 59700034 ~ 59704083 (-)
LOC103030505 LOC103030505,LOC108434978 coding downstream 183585 59599420 ~ 59608991 (-)
eif2b4 eif2b4 coding downstream 218965 59562829 ~ 59573611 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding downstream 305833 59445511 ~ 59486743 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding downstream 358263 59358827 ~ 59434313 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding upstream 51249 59882140 ~ 60059600 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding upstream 266597 60097488 ~ 60123478 (-)
LOC103033561 NA coding upstream 297156 60128047 ~ 60145920 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding upstream 332449 60163340 ~ 60177354 (-)
LOC103034514 LOC108434990,LOC108258108 coding upstream 353803 60184694 ~ 60219056 (-)
G29509 NA non-coding downstream 184730 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 214181 59576238 ~ 59578395 (-)
G29494 NA non-coding downstream 218040 59574328 ~ 59574536 (-)
G29492 NA non-coding downstream 232912 59554331 ~ 59559664 (-)
G29480 NA non-coding downstream 349574 59442779 ~ 59443002 (-)
G29559 NA non-coding upstream 21164 59852055 ~ 59852468 (-)
G29563 NA non-coding upstream 27175 59858066 ~ 59858339 (-)
G29608 NA non-coding upstream 243181 60074072 ~ 60091759 (-)
G29681 NA non-coding upstream 553112 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 557089 60387980 ~ 60388361 (-)
snx17 snx17 other downstream 239666 59506926 ~ 59552910 (-)
G29478 NA other downstream 354278 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 706690 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 857787 58932963 ~ 58934789 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 1617872 58159207 ~ 58174704 (-)
LOC103034188 LOC108434976 other upstream 318506 60149397 ~ 60162066 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 520381 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 538155 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 1461985 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 2000950 61831841 ~ 61890729 (-)

Expression


Co-expression Network