G29270


Basic Information

Item Value
gene id G29270
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 58848687 ~ 58851351 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU39266
TggggatttattaacaaaaatacaaaataaacatggaatTGACTGAAAACAGGACTGGGGAAACTcgggaaaacatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacaggtagAACACAGGgtcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacag
>TU39268
TggggatttattaacaaaaatacaaaataaacatggaatTGACTGAAAACAGGACTGGGGAAACTcgggaaaacatggaacactgacagacgaaaaacgtacaaggatcgacaccggggaaatgaaacacggaccttaaatagaggtgcacacacacaggaaacatgaaacacctgggacgaaggggcggagttacagaagaacacaggtgagtggaaaaacacaggtagAACACAGGgtcacgggtcacgtgggacaacacaggcacgaggacagacaggaaacagggccaggaccttacag

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU39266 True 303 lncRNA 0.48 2 58848687 58851351
TU39268 False 303 lncRNA 0.48 2 58848687 58851351

Neighbor

gene id symbol gene type direction distance location
LOC103031445 thbs1b,thbs1,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 254761 58582728 ~ 58593926 (-)
LOC103032305 LOC103032305,LOC108444535 coding downstream 346156 58498747 ~ 58502531 (-)
LOC103032621 irf4,LOC108257893 coding downstream 353229 58485608 ~ 58495458 (-)
LOC103033450 foxq1 coding downstream 429841 58417381 ~ 58418846 (-)
LOC103033774 foxf2,LOC104946676 coding downstream 438106 58407436 ~ 58410581 (-)
LOC103037326 enpp5,LOC107561943,LOC107701510,LOC107746078 coding upstream 83541 58934892 ~ 58942197 (-)
LOC111189957 enpp5,LOC107746078,LOC107561943,LOC107701510 coding upstream 96302 58947653 ~ 58952885 (-)
ccm2 ccm2 coding upstream 125311 58976662 ~ 58996762 (-)
LOC103026850 LOC108435006,LOC107589054,LOC107723250,LOC107746162,LOC107697321,LOC104922452 coding upstream 507476 59358827 ~ 59434313 (-)
LOC103027424 si:ch211-278j3.3,LOC108435005,LOC108257871,LOC107723221,LOC107589055,LOC105897761 coding upstream 594160 59445511 ~ 59486743 (-)
G29260 NA non-coding downstream 28834 58818634 ~ 58819853 (-)
G29255 NA non-coding downstream 67613 58780689 ~ 58781074 (-)
G29254 NA non-coding downstream 68137 58780204 ~ 58780550 (-)
G29252 NA non-coding downstream 68701 58779055 ~ 58779986 (-)
G29253 NA non-coding downstream 73736 58774515 ~ 58774951 (-)
G29279 NA non-coding upstream 11500 58862851 ~ 58863495 (-)
G29291 NA non-coding upstream 36767 58888118 ~ 58888409 (-)
G29369 NA non-coding upstream 280190 59131541 ~ 59132137 (-)
G29370 NA non-coding upstream 282060 59133411 ~ 59133672 (-)
G29393 NA non-coding upstream 385146 59236497 ~ 59243835 (-)
LOC111189852 LOC108411318,LOC108257913,LOC107721335,LOC102302990,LOC102081001 other downstream 673983 58159207 ~ 58174704 (-)
LOC103041090 LOC103041090,LOC108424449 other downstream 853211 57991641 ~ 57995476 (-)
ppp4r4 ppp4r4,LOC107711657 other downstream 1007369 57812262 ~ 57841318 (-)
LOC103031416 dpf3,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC108257599,LOC107562702,LOC107602065 other downstream 2153852 56640351 ~ 56694835 (-)
G28536 NA other downstream 3032089 55815872 ~ 55816598 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other upstream 81612 58932963 ~ 58934789 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other upstream 147190 58998541 ~ 59085886 (-)
G29478 NA other upstream 586249 59437600 ~ 59438298 (-)
snx17 snx17 other upstream 655575 59506926 ~ 59552910 (-)
LOC103034188 LOC108434976 other upstream 1298046 60149397 ~ 60162066 (-)

Expression


Co-expression Network