LOC103035477 (six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490)


Basic Information

Item Value
gene id LOC103035477
gene name six6b,six6,LOC103035477,LOC108434975,LOC107697293,LOC107589092,LOC107743981,LOC107701490
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 60307935 ~ 60311646 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256667.3
CACCGTTTAAATATATAGAGAGTATATAGATTCGTCTAGAGCCTGAGATGTCGAGGGGCTACACTATGGAGAACTAATTTTACATTGCTCTGAAACGGGAAAGAAATAGTGCGTTTAGTAACACATTAAGCGTTTGATGCTGGGCGGCAGAGGTTAAGAGAGTCCGTTATTTTGTGTATCGGTGACTCTGATGGGGAATCTGTAAAATTGGTGGACTCGTGTTGCACGTTGTGGTACTacagttatttattaaatatgacTTTGCGCATGCACGTCGAGCAATGCATGCTGCAAATTTGGTTTGTGCGCATAATTGAACGAATTTGTCAATGTGTAGTAGGCTAGCCCAGGAAATCCGAACATCGAAGGGATGAACCGAAAGAACCGATACATAGCTGTCTTTTAATCTCGCTATACCTTTTCTAAGCCGCTGCATTTCAGACGGGTACGCGCACTGGGGAAGCTCGTGAACGCGCGTATCGGTTTTTGAATGGCAAAAGGGCAATCGCCGTGTCGTCTCCTATTCGTGCAAGGTTGCGTTATGAAAAAGACTGCTTGTGACAGCCGAGCTCTGCTTATGAGAGATAGGCTGCTGCTGTGTATATGAAACAGCACGAAAACACATCTCAGTTGTGCTCTATAGGGAACTGAACGCTGAACGCTTTGGGAAGGATGCTTTGGACGCACGTAAAAAATCACAACCAGCGCaatgaaataataagaaaaaaatgaacaaaattctAATCggattgtttttttctgctgagaTCTATCAGGGAGGTGCTGAAATCTATTTGCACTCAGTTCCACGTGATTGGCACACTTGACAGTGATTGACAGGAGTCCATGGAAACTACGCAACCAATCTGCCAGCTCCAATAGAAAATCAGACGAGGACAGGACGTCTTTTTTCACCCCCCCTCCTCAAAAATATCTCCGTTCCTGTGCTATATTCTCGTTCACTCGGGCTCCCCGTATCTCCTGCAGAGGCTGCTGCCGTCAGCCAGCCAGAGGGGCACCCTCCTTTCCTCAGCAGCGTCTAACTGGCTCGTCTGCTGGctctgagagagggagagcgaaaaggagagagggagtgagagagagaaaaggagaagacCGCGAGGGGGGGAGAAAGCACACACAGAAGCCTTCATGTTTCAGCTGCCAATACTGAATTTCAGTCCCCAGCAGGTAGCGGGGGTATGCGAGACTCTGGAGGAGAGCGGGGACATCGAGCGCCTCGGCCGCTTCCTCTGGTCGCTGCCCGTCGCGCCCGCTGCCTGCGAGGTACTCAACCGAAACGAGTCCGTGCTGCGAGCTCGCGCCATCGTGGCCTTCCACACCGGGAACTTCCGAGAGCTCTATCACATCTTGGAGAACCACAAGTTCACCAAAGAATCCCACTCCAAGCTGCAAGCACTGTGGCTGGAGTCACACTACCAGGAGGCAGAAAAACTGCGAGGGCGCCCGCTGGGGCCGGTGGACAAGTACAGGGTGCGCAAGAAGTTCCCGCTACCCAAAACTATTTGGGACGGCGAACAAAAGACTCATTGCTTCAAAGAAAGGACCAGGCACTTGCTGCGAGAATGGTACTTGCAGGACCCTTACCCGAACCCGAGCAAAAAGAGGGAGCTCGCACAAGCTACGGGACTTACACCCACCCAAGTGGGCAACTGGTTTAAAAACCGAAGACAAAGGGATAGAGCAGCGGCCGCGAAAAACAGACTACAACAACAGGTGCTGTCCAACGGCTCGGTTCCTGGCGAAGAGGGAGCCGTGGACCGGCTGGGCAGCGCGTCGAGCCCAGAAGCCAGTCTGTCTAGCAAAGCTGCTGCTTCAGCCATCTCCATCACATCGAGTGACAGCGAATGTGACATCTAACGTCGTCTCGTCGGGGGCAAAGTGGGAAGACTGGGAGAGCACGAACACCTTAAGAAGAAAACGGAGACAGACAATcacaaagataaacaagcacATCAGTGCCTGCCTTAACGTATCAAAGGCcgtgttctttctttctttttatttctttctttttgtaattatttgatGGCTGTCAGACCAGCCAGGGATGGACGGAATGCTctatctttaaaatgtatttatcttttttcatAACCAACACAGAGATGATCCTTTGGGGGACATAAaaatagacagagaaagagagagaaaaagaagagatagctagaaagagggaaaagagtgggagagcagaggagaggaagaaagcGAGATCCTGACCGCGTACAAATTACTTTTGTATGAAGCAAAACCGGATGCCTCAATGGAACAGGACAAACACAAAACAGGAGaccatattttttgtttttgaaaaggACTTCATGTTGAATcgacattttaccatttatcACATTTTCTAAGATGTTTACGTATTAAAAAAGTTGTTGCTCTTATAGAAACATTTGATTTGCTTGCTCATTTCAAGTccgttcatttttttatgtatatcgATGGACATTTATTAGAGTGCGCCGAGTAGTGGACgtttgttttaatgatttaaggacttttaagttaataaaatgtttgatgATCAAA

Function

symbol description
six6b Enables double-stranded DNA binding activity. Involved in gene expression. Acts upstream of or within camera-type eye development and cell population proliferation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; eye; and kidney. Human ortholog(s) of this gene implicated in optic disc anomalies with retinal and/or macular dystrophy. Orthologous to human SIX6 (SIX homeobox 6).
six6 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in eye development and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus. Implicated in optic disc anomalies with retinal and/or macular dystrophy.

NR:

description
homeobox protein SIX6

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256667.3 True 2562 mRNA 0.47 2 60307935 60311646

Neighbor

gene id symbol gene type direction distance location
LOC103034514 LOC108434990,LOC108258108 coding downstream 88879 60184694 ~ 60219056 (-)
LOC103033873 hif1a,LOC107589062,LOC107743977,LOC107563689 coding downstream 130581 60163340 ~ 60177354 (-)
LOC103033561 NA coding downstream 162015 60128047 ~ 60145920 (-)
LOC103032801 ppp2r5ea,LOC103032801,LOC108434994,LOC108257929,LOC107697307,LOC107701493,LOC107707079,LOC107743972,LOC107563687 coding downstream 184457 60097488 ~ 60123478 (-)
LOC103032183 kcnh5a,LOC108434995,LOC107701494,LOC107563685,LOC107743971,LOC107707078,LOC107697309,LOC108257569 coding downstream 248335 59882140 ~ 60059600 (-)
LOC103027016 LOC104934434,LOC108434982,LOC103370010 coding upstream 290764 60602410 ~ 60607157 (-)
xrcc3 xrcc3 coding upstream 385640 60697286 ~ 60702253 (-)
btbd6 btbd6,btbd6b,LOC107755235,LOC107718408,LOC107589075,LOC107701487,LOC107560384 coding upstream 419556 60731202 ~ 60735851 (-)
LOC103028984 LOC108412120 coding upstream 857856 61169502 ~ 61201223 (-)
nudt14 nudt14,LOC107683965,LOC107755236,LOC107718404,LOC107701483 coding upstream 1058349 61369995 ~ 61430279 (-)
G29608 NA non-coding downstream 216176 60074072 ~ 60091759 (-)
G29563 NA non-coding downstream 449596 59858066 ~ 59858339 (-)
G29559 NA non-coding downstream 455467 59852055 ~ 59852468 (-)
G29509 NA non-coding downstream 700089 59607175 ~ 59607846 (-)
LOC111190079 NA non-coding downstream 729540 59576238 ~ 59578395 (-)
G29681 NA non-coding upstream 72357 60384003 ~ 60384462 (-)
G29684 NA non-coding upstream 76334 60387980 ~ 60388361 (-)
G29702 NA non-coding upstream 84003 60395649 ~ 60396246 (-)
G29707 NA non-coding upstream 149342 60460988 ~ 60463346 (-)
G29716 NA non-coding upstream 152330 60463976 ~ 60519797 (-)
LOC103034188 LOC108434976 other downstream 145869 60149397 ~ 60162066 (-)
snx17 snx17 other downstream 755025 59506926 ~ 59552910 (-)
G29478 NA other downstream 869637 59437600 ~ 59438298 (-)
LOC103023855 xkr6b,xkr6,LOC103023855,LOC108435015,LOC107746102,LOC107701509,LOC108258067,LOC107589046,LOC107723320,LOC107684793 other downstream 1222049 58998541 ~ 59085886 (-)
G29317 eif5,LOC103022293,LOC107561927,LOC107746071,LOC108435020,LOC107589079,LOC107701513,LOC107582488 other downstream 1373146 58932963 ~ 58934789 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other upstream 39626 60351272 ~ 60364744 (-)
LOC111191938 NA other upstream 57400 60369046 ~ 60369614 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other upstream 981230 61292876 ~ 61364878 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other upstream 1520195 61831841 ~ 61890729 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 2825305 63136951 ~ 63288108 (-)

Expression


Co-expression Network