G30288


Basic Information

Item Value
gene id G30288
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 63017699 ~ 63018729 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU40594
CTGATTACCCTGTCGTTcatgtttctttctttatgtTGTCTCATTAAATATTTGGGTAGCAATCATGCTGATTAGCTTTACTGTAACAGATCTGCCAACAGCATTTTGCATGACTGGTACACATTCTAAAATCTGGATATTGTTTAATCTCACATTTCGCCAGGTTATCACTAAAGATGATTCCACACAGAGATCTGCATGTAAGCAGAGTTCTTTCAGCCAATCGGAcaatgacactaaacataaagccag

Function

NR:

description
PREDICTED: ecotropic viral integration site 5 protein homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40594 True 252 lncRNA 0.43 2 63017699 63018729

Neighbor

gene id symbol gene type direction distance location
LOC103046711 LOC108414824 coding downstream 9718 62979312 ~ 63007981 (-)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 coding downstream 54781 62943073 ~ 62962918 (-)
LOC103034091 NA coding downstream 199951 62798619 ~ 62817748 (-)
LOC103030680 cdh2,LOC108416271,LOC108258170,LOC107561048,LOC107746014,LOC107701519,LOC107571545 coding downstream 655439 62301147 ~ 62362260 (-)
LOC111191939 NA coding downstream 803033 62213160 ~ 62214666 (-)
LOC103038514 LOC108414611 coding upstream 95361 63114090 ~ 63119496 (-)
lrrc66 NA coding upstream 317121 63335850 ~ 63356289 (-)
sgcb sgcb,LOC107597442,LOC107665396,LOC107718388,LOC107601954,LOC107683993,LOC107755229 coding upstream 339182 63357911 ~ 63364411 (-)
lnx1 lnx1,LOC107683953,LOC107665364 coding upstream 805143 63823872 ~ 63907665 (-)
kdr kdr coding upstream 1316984 64335713 ~ 64370564 (-)
G30247 NA non-coding downstream 50371 62966449 ~ 62967328 (-)
G30231 NA non-coding downstream 85935 62931118 ~ 62931764 (-)
G30229 NA non-coding downstream 87973 62926914 ~ 62929726 (-)
G30196 NA non-coding downstream 174565 62839134 ~ 62843134 (-)
G30150 NA non-coding downstream 266164 62718293 ~ 62751535 (-)
G30291 anapc4,LOC107683992,LOC107665412 non-coding upstream 47800 63066529 ~ 63069341 (-)
G30296 NA non-coding upstream 65598 63084327 ~ 63086956 (-)
G30286 NA non-coding upstream 106785 63125514 ~ 63134734 (-)
G30341 NA non-coding upstream 136202 63154931 ~ 63157654 (-)
G30348 NA non-coding upstream 273290 63292019 ~ 63295723 (-)
LOC103043586 mark3b,LOC108412004,LOC107697167,LOC108258043 other downstream 1126970 61831841 ~ 61890729 (-)
LOC103029720 jag2,jag2b,LOC107718403,LOC107755239 other downstream 1652821 61292876 ~ 61364878 (-)
LOC111191938 NA other downstream 2648085 60369046 ~ 60369614 (-)
LOC103035785 ppm1a,LOC108434987,LOC108258036 other downstream 2652955 60351272 ~ 60364744 (-)
LOC103034188 LOC108434976 other downstream 2855633 60149397 ~ 60162066 (-)
fryl fryl,LOC107683942,LOC107665346 other upstream 118222 63136951 ~ 63288108 (-)
G30376 NA other upstream 311315 63330044 ~ 63334846 (-)
usp46 usp46 other upstream 415063 63433792 ~ 63485021 (-)
scfd2 scfd2 other upstream 509552 63528281 ~ 63763673 (-)
LOC103036530 cyp2p7,cyp2j20,LOC108415355 other upstream 1755955 64774684 ~ 64799176 (-)

Expression


Co-expression Network