RNA id: TU40531


Basic Information

Item Value
RNA id TU40531
length 880
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G30247
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 62966449 ~ 62967328 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgcatttactattattattagaaaaataacaaacaaaaataaacccaaaatgttgacaaaaatataatctaacgaatttcaaaaaaataaaacgaaattctccacacaaccaaagacaattactaaaacttgtaatactgaaaaaaacggaaaaaacggaaaaacgcgtctggggatgaaattaaacaaaccaagccacactcaaaggaaatatgtatatataaacaaaacaaaataaaagacaaaaacaacaatctaatgaccgttaaaatggtattaatataacagcttcaccaaaagagaatagagcttagatcgggcccaaaacgtgcacgttctgccagagcccgacccaacccgaaccatgaactgtcattatgagcccgagcccgacccgatccgccccataaactgtctgttttcgggctgtttgaatgagcgaaatataatcagaattatgttaatttacataaaagcatagaactattatttaatttaaatgatttttaagaacagctacacacaatgctgcaagctCTGCGCCCAGAGCTATgtgattacattttaattttattttgtttttattttttctgttcagtaaatttttagggtgggcttgctagtttttattagttttcacacatctcacacactgtatctcctgtttctctttcatctgcctggcgctcatattgtaatcccatacatagttctgcagtttctcagtgttttctgtcgtattttgcggctagcgcgagtgctttacacaagaacaaacgccacggaccacgaggtgccgcgcgctcggcacaacaccgcctgCTGTATAACTCcactgtacaacagcgcttataaataaattaaacacgaaaatgagggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU40515 lncRNA downstream 34685 62931118 ~ 62931764 (-) True G30231
TU40512 lncRNA downstream 36723 62926914 ~ 62929726 (-) True G30229
TU40472 lncRNA downstream 123315 62839134 ~ 62843134 (-) True G30196
TU40418 lncRNA downstream 214914 62718293 ~ 62751535 (-) True G30150
TU40405 lncRNA downstream 222161 62737207 ~ 62744288 (-) True G30141
TU40594 lncRNA upstream 50371 63017699 ~ 63018729 (-) True G30288
TU40597 lncRNA upstream 99201 63066529 ~ 63069341 (-) True G30291
TU40608 lncRNA upstream 116999 63084327 ~ 63086956 (-) True G30296
TU40588 lncRNA upstream 158186 63125514 ~ 63134734 (-) True G30286
TU40668 lncRNA upstream 187603 63154931 ~ 63157654 (-) True G30341
XM_007257013.3 mRNA downstream 3531 62943073 ~ 62962918 (-) True b4galt6
XM_007257007.3 mRNA downstream 148701 62798619 ~ 62817748 (-) True LOC103034091
XM_007233018.3 mRNA downstream 604189 62301147 ~ 62362260 (-) True LOC103030680
XM_022668152.1 mRNA downstream 751783 62213160 ~ 62214666 (-) False LOC111191939
XM_022668148.1 mRNA downstream 751794 62213160 ~ 62214655 (-) True LOC111191939
XM_022664256.1 mRNA upstream 11984 62979312 ~ 63007981 (-) True LOC103046711
XM_007257016.2 mRNA upstream 46910 63014238 ~ 63065232 (-) False trappc8
XM_007257015.2 mRNA upstream 46910 63014238 ~ 63065232 (-) False trappc8
XM_007257014.2 mRNA upstream 46910 63014238 ~ 63065232 (-) True trappc8
XM_007257024.3 mRNA upstream 146762 63114090 ~ 63119496 (-) True LOC103038514
XR_002649101.1 other downstream 1078561 61833448 ~ 61887888 (-) False LOC103043586
XR_002649735.1 other downstream 2596835 60369046 ~ 60369614 (-) True LOC111191938
TU39714 other downstream 2804425 60157538 ~ 60162024 (-) False LOC103034188
TU39539 other downstream 3528151 59437600 ~ 59438298 (-) True G29478
TU39330 other downstream 4031660 58932963 ~ 58934789 (-) True G29317
TU40670 other upstream 242953 63210281 ~ 63288108 (-) False fryl
TU40671 other upstream 242953 63210281 ~ 63256634 (-) False fryl
TU40672 other upstream 242953 63210281 ~ 63231566 (-) False fryl
TU40747 other upstream 362716 63330044 ~ 63334846 (-) True G30376
XR_002649174.1 other upstream 466464 63433792 ~ 63465756 (-) False usp46

Expression Profile