RNA id: trnat-ugu


Basic Information

Item Value
RNA id trnat-ugu
length 73
RNA type tRNA
GC content 0.56
exon number 1
gene id trnat-ugu
representative True

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6650705 ~ 6650777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctccatagctcagtggttagagcactggtctTGTAAACCAGGGGTCGCGAGTTCAATTCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22712 lncRNA upstream 4708 6643184 ~ 6645997 (+) True G16811
TU22716 lncRNA upstream 7628 6605267 ~ 6643077 (+) True G16815
TU22733 lncRNA upstream 73400 6576991 ~ 6577305 (+) True G16831
TU22731 lncRNA upstream 75480 6574946 ~ 6575225 (+) True G16829
TU22730 lncRNA upstream 75929 6574537 ~ 6574776 (+) True G16828
TU22740 lncRNA downstream 23938 6674715 ~ 6684107 (+) True G16838
TU22742 lncRNA downstream 38943 6689720 ~ 6800136 (+) True G16839
TU22749 lncRNA downstream 250445 6901222 ~ 6901911 (+) True G16845
TU22912 lncRNA downstream 275994 6926771 ~ 6927019 (+) True G16968
TU22916 lncRNA downstream 297293 6948070 ~ 7049298 (+) True G16969
XM_007229460.3 mRNA upstream 8770 6606985 ~ 6641935 (+) True tmem245
XM_015604598.2 mRNA upstream 8770 6606986 ~ 6641935 (+) False tmem245
XM_007229461.3 mRNA upstream 46830 6593467 ~ 6603875 (+) True frrs1l
XM_007229458.3 mRNA upstream 98704 6544275 ~ 6552001 (+) True alg2
XM_022679550.1 mRNA upstream 326810 6293072 ~ 6323895 (+) True erp44
XM_007229462.3 mRNA downstream 267281 6918058 ~ 6922362 (+) False ino80c
XM_022679630.1 mRNA downstream 267281 6918058 ~ 6921842 (+) True ino80c
XM_007236503.3 mRNA downstream 341126 6991903 ~ 7001192 (+) False pdp1
XM_022679639.1 mRNA downstream 341175 6991952 ~ 7001192 (+) False pdp1
XM_015602247.2 mRNA downstream 341212 6991989 ~ 7001192 (+) True pdp1
TU22722 other upstream 117837 6532396 ~ 6532868 (+) True G16820
TU22663 other upstream 472821 6172756 ~ 6177884 (+) False LOC103025913
TU21431 other upstream 4968683 1681159 ~ 1682022 (+) True G15839
XR_002651100.1 other upstream 5317914 1322516 ~ 1332791 (+) False LOC103025578
XR_002651098.1 other upstream 5318424 1322516 ~ 1332281 (+) False LOC103025578
trnat-ugu_1 other downstream 1203 6651980 ~ 6652052 (+) True trnat-ugu_1
trnat-ugu_2 other downstream 2807 6653584 ~ 6653656 (+) True trnat-ugu_2
trnat-ugu_3 other downstream 4096 6654873 ~ 6654945 (+) True trnat-ugu_3
trnat-ugu_4 other downstream 5779 6656556 ~ 6656628 (+) True trnat-ugu_4
trnat-ugu_5 other downstream 8624 6659401 ~ 6659473 (+) True trnat-ugu_5

Expression Profile