G16839 (galnt1,LOC107593713,LOC107657719)


Basic Information

Item Value
gene id G16839
gene name galnt1,LOC107593713,LOC107657719
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 6689720 ~ 6800136 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU22742
AAGGGAGTAGTAGTGGCGTGGGATCTGTGAGTCAGGATAGACGTTCTCAAGGTACCAGGAGAAAGGCTTGCACTGCAGCTTCTGTCTCAGAGACGCCCTGGTCGCTATGTCCCCGTAGTCCACCTTCGTCACTCCAGGGGAGATGATGTAGAAGAAGTTTTTGAACTCGTCCATCCAGACCTCGGCGAGGcgtctgttgtttttgttgataATCTGTCCTGTCCCTCCGGGGAACGTGTACGGCGTGGCTTTACGGAACACGTGACCTACGTGAGAACACGTCACAATCTCTAAAGTCCCACCACACTGCCaaatCCTAAAGGAAATCTCCAGGTTCTCTCCTCCCCAGATGTCCATTCCTGCATCATATGTGCCGATCTCCTGGAAGTAATCTCTGTCTATGGAGAACAGTCCACCCGCCATGGTAGGAGTCcTGACTGGCAGTGTTCTGTCTCCTTTCCGGCGGTCCATCTCTCGTTGGGGTACAGGGTACCAGCGGAAGTTGAGTTTCCAGTTAAAGCCTCCATACGTCATATCTGACCCCGCCATGTACTCAAACGTATCATCACTGATCACATCAATGATGGGGCACACCACTGTTTTCTTGTCTTGTTTGATGCGAGAGAGTAGTGGCTCCAGCCAGCCCATGGTACACTCGCAGTGAGCATCGAGGAAGGTGATGACCTGACCCGTAGAGAGCGACGCCCCCTTCAGCCGAGCACGAATCAGACCAGAGCGCTGCTCCATTCGCACAATCCGCACAGGTACTTCCAACTTCCGCACATACTGCTCCAATTTACGCTTAAGGAAGTctCTCTCACTGGCATCATCCACCAGCACCACCTCCTCCAGCAGGTGTCGTGGGGAGCGGTTGATGACGCTGTGGACGGTGCGCAGTAACGTGGTCCACGCTTCGTTATGGAACACGATCACCACACTGGTGCGGGGAAGATCATCTGGATACACTTTATTCTTACACccTTCAAGACGAACATCAGGTAGGGAGCGGTTGAGAGCGATCATTTCACTGGCCATCAGATTGAACTGGTTGATCTTAAACATCTCCTTCATCTTCTCATGTTGTTCTTTAGGAATGACCACTGGTTTTCCCATCTCTCCTGGCCCATCGTGAGGTCTCGGGACCACCTCGTCTCTTCCTGGCAGCCCCCTGTCCTTCTTGTCATCACACTTGTTGCACTCGCTGAAGTAGAGCAGGATGAACATGTCCAGCATCACCCACACCAGAGAGGTGGCCAGCACTACTTTACAATACGCAAACTTCCTCATCTTCACACCTGTAGGCAGAAATCAGGATGTAGTGAAGGGGTCTCCGGTCCTACGGAGCTTCAGATCCCACTGCTGACAC

Function

symbol description
galnt1 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT1 (polypeptide N-acetylgalactosaminyltransferase 1).

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU22742 True 1366 lncRNA 0.52 9 6689720 6800136

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_6 NA coding upstream 21827 6667821 ~ 6667893 (+)
trnat-ugu_5 NA coding upstream 30247 6659401 ~ 6659473 (+)
trnat-ugu_4 NA coding upstream 33092 6656556 ~ 6656628 (+)
trnat-ugu_3 NA coding upstream 34775 6654873 ~ 6654945 (+)
trnat-ugu_2 NA coding upstream 36064 6653584 ~ 6653656 (+)
ino80c ino80c coding downstream 117922 6918058 ~ 6922362 (+)
pdp1 pdp1,LOC107706250,LOC107687812,LOC107595893,LOC107593682 coding downstream 191767 6991903 ~ 7001192 (+)
LOC103046513 rnf41l,LOC108443277,LOC107593678,LOC107723454,LOC107687809 coding downstream 301445 7101581 ~ 7111945 (+)
esrp1 esrp1,LOC107593677,LOC107706288,LOC107657715 coding downstream 342232 7142368 ~ 7172757 (+)
LOC103022302 LOC108431077 coding downstream 499535 7299671 ~ 7307085 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding upstream 5613 6674715 ~ 6684107 (+)
G16811 NA non-coding upstream 43723 6643184 ~ 6645997 (+)
G16815 NA non-coding upstream 46643 6605267 ~ 6643077 (+)
G16831 NA non-coding upstream 112415 6576991 ~ 6577305 (+)
G16829 NA non-coding upstream 114495 6574946 ~ 6575225 (+)
G16845 NA non-coding downstream 101086 6901222 ~ 6901911 (+)
G16968 NA non-coding downstream 126635 6926771 ~ 6927019 (+)
G16969 NA non-coding downstream 147934 6948070 ~ 7049298 (+)
G17062 NA non-coding downstream 537295 7337431 ~ 7339982 (+)
G17070 NA non-coding downstream 551482 7351618 ~ 7355186 (+)
G16820 NA other upstream 156852 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 511836 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2172411 4515997 ~ 4517309 (+)
nrgn NA other upstream 4518513 2150630 ~ 2171207 (+)
G15839 NA other upstream 5007698 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 622435 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 1368703 8168839 ~ 8184837 (+)
G17414 NA other downstream 1875483 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 2091108 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 2099804 8899940 ~ 8904004 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002430 galnt1,LOC107593713 coding CM030136.1 CM030136.1 13788543 ~ 13793190 (-)