esrp1 (esrp1,LOC107593677,LOC107706288,LOC107657715)


Basic Information

Item Value
gene id esrp1
gene name esrp1,LOC107593677,LOC107706288,LOC107657715
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7142368 ~ 7172757 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007236512.3
ACAAAAACGAGCACAGGCGAGCAGCCATTACTCCCGGACTGGCGGACATTCGCTTCAGCATCGCTTCAGCAGAGATAAACGGGGGAAATAAGGAGCGAAACCGCTGAGTTTACCTGTCCAtaggtgtggggtgtgtggggCCCTCACTTCACTTCCGTCACCTGGAGTCGGTGGCTGGGGATTTCTTCACCTTTCTGACGCTTagagttatttttatttccacgGTTTCTCTTTTAAAAATGACGGTAAATCCAGAGAACTTGGTGCTGTTCTTCACCACGACGTGCGGGGCGAGCGGCGAGCTGCTGGGGTCAGACGAGACCGAGGCGGTGCAGCTAGTCTGGCAGGTCCTCAATTTAGTCACTAAAAAGCCCGGACGGGTGAATGAAGTGCTGGTGAAGCCGGAGagcctgtgtgtgtctgaggAGTGTGTGGAGGTCAGTGGGGTCACCACTGAGGCCCTCAGCTCTGCGGCCCCTCTGGAAGAGGCTCTCAACCAGTTCAACGAAAGGTTGTGTTcagaaataaacacagatgCAGCCAACTCCTTCTGTCTCTGTACTGATGGTCAGCTGCACCTGCGTCAGGTCCTGCATCCAGAGGCTTCCAACAAGAATGTTCTGTTGCCCGAatgtttcttctcttttttcgaCCTTCGGAAAGAGTTCAAGAAATGCTTTCCATCTGAAGCTGATCATAAGGAATTGGATCTTAAATTCATGACAGATTACCTGAATTTGAGTGAGGATTCCTCTGATCAGGTCTTCACTGCACAAAAGATTCACCAGATGTCCAGCATTGCCCAAGCACTCATCTCTGAGCCTACCTGTCATGTCTTCTCTTGCCCAGAGAAAGTAAATGAGAAGTTTGAAACCGGTACATGCAGCAAGATGGAGCGGATAGATGACAACACTGTGATCAGGGCACGAGGTCTTCCCTGGCAGTCCTCAGACCAGGACGTCGCACGTTTCTTCAGGGGCCTCAACATTGCCAAaggagGTGCTGCTCTGTGTCTGAATGCTCAAGGCAGGAGGAATGGCGAGGCTCTAGTACGGTTCGAGAGTGAAGAGCATCGAGACTTGGCTTTGCAGAGACACAAACATCACATGGGCTCCAGATATATTGAGGTTTATAAAGCCACAGGTGAAGACTTCTTAAAGATTGCAGGAGGCACCTCTAATGAAGTTGCTAACTTCTTGTCGCGGGAGAATCAGGTGATTGTACGTATGCGTGGGCTGCCGTTCACGGCCACAGCGGAGCAGGTTCTGCAGTTCTTCTCTCCATCGTGTCCGGTGACGGACGACGGCGAGGGCATTTTGTTTGTGCGCTTTCCCGATGGCAGGCCCACCGGGGACGCCTTTGTTTTGTTCTCCTGTGAGGAGTACGCTGAGAATGCACTTAAAAAGCACAAGGAGATCCTGGGCAAGAGATACATCGAGCTGTTCAGAAGCACTGCAGCCGAGGTTCAGCAGGTATTAAACAAGTACTCTTCGGCTCCGCTGATTCCAGTTGCCCCCTCCCCGATCCTGCCGATTGTGCCACAGCCCACCTTTGTGCCATCGCCAGCTGCTATTGCTGCAGTAGTTGGAACGAGGGACTGTCTGAGACTAAGGGGTCTGCCCTATGACGCCTCTGTTCAGGACATACTGCTCTTCCTGGGAGAGTACACTGCTGACATCAGACCACATGGAGTACACATGGTGCTCAACCAACAGggACGCCCTTCAGGTGATGCGTTCATCCAGATGCGGTCAGCAGAGAGGGCGCACCTGGCGGCACAGCGCTGCCACAAGCGGAGCATGAAGGAGCGATATGTGGAGGTATTCCCCTGCTCGGCGCAGGAGATGAACATCGTGCTGATGGGAGGCTCGCTCTCCAGGAGTGGCCTCTCGCCGCCGCCATGTAAGTTACGACGTCTCACTCCTGCATCGTACTCTTTCCCTCCTGGAGGAGCTGTACTTCCCACTGGAGCATTACTTCCTGCCGGGGCAGTTCTTCCAGTGGAGGCAGCACCTGTATACCCCTCCCAATTCCTGTTGAGTCCTCGCCCCCTAGCACCTGCTTTCTACCCAGCAACCAACCAGATGTATATGAACTACACTGCCTACTATCCAAGTCCCCCAGGCTCCCCACCCAACATGGGCTACTTCCCCACAAGCCACGCCCAATCAGCAGGATCTGTCCTCTCCAGTCCGCCCACAGCAATGATCAGGATGCAAAGCCACACCTCTTCCCATGCCTACCCCAACGGAGTTAAAGAGTTTCTCAGCATGGTGCAGAGCTATCAGcccaGCAACAGTGATGCCTTGGTAACCCTCCCCTCCCTTCTGCCAGCCAAACAGTCCATTGGAGACCAGAGCCTTGGAGGCGGAGCTTATCTGGACTTGCAGCTGCTACATGCCACTTCAATGTAAAATTATAGACCAGCCCCCAGAACCGCAGCAAGTTATATCACTCTAGCTATTTATGTGAAACCTATAAAAAGAATATATGTATttgaaattagatttttttatgtattgcacactgtgtattATTTTGCATTAGTATATGCATTAGATATGTTCTCCTCATAGGCAAATACTGGacatgtgtgtttctgttttgtgcgagtgtgtgagagagtgtgtgctcAAGTGTGGTAGAAAGATGAACTCAATCACTCAGGAAATCCATCAGTGACAATCAGCAGACTCTGCTTAGTTTCTGCCTCCTGCATCAAAACAGACACTTTCCTTTTTCCTgtaattgttcatttttttattatcagttaAAGCCAAAGCATTAGATTTCTACGAGTCTatgagtgagtgtatgtgtCATTTCCTTCAAACATGCTGGTCTgcgcgtgagtgtgtgtgtgtgtgtgtatgcctgCATGTATGAGTGTTTGTACCTATATCCCAACTGATGTGACTGTActatgagtatgtgtgtgtttttatatacagtactgtgcaaaagtcagGGAGTGCCCTTCATTtttaactgtgttaaaaaatgAGCTATTCAATTTTTggacatttattaatataaaaaaatacacaaaaaagtaGCTGCTAAATCTAAATCAATAACTGAATCTAATCTAACTTTTATATGCCCTTCATTCTTTTCAGGAAAcctactttcactttctcttcAGGGAGATTCTTCCACAGCTTCAAAGTTCAGTCTAAAGGCAGAAACACACTAagagcaagacaaaaatacaaaccAAC
>XM_007236513.3
CAAAAACGAGCACAGGCGAGCAGCCATTACTCCCGGACTGGCGGACATTCGCTTCAGCATCGCTTCAGCAGAGATAAACGGGGGAAATAAGGAGCGAAACCGCTGAGTTTACCTGTCCAtaggtgtggggtgtgtggggCCCTCACTTCACTTCCGTCACCTGGAGTCGGTGGCTGGGGATTTCTTCACCTTTCTGACGCTTagagttatttttatttccacgGTTTCTCTTTTAAAAATGACGGTAAATCCAGAGAACTTGGTGCTGTTCTTCACCACGACGTGCGGGGCGAGCGGCGAGCTGCTGGGGTCAGACGAGACCGAGGCGGTGCAGCTAGTCTGGCAGGTCCTCAATTTAGTCACTAAAAAGCCCGGACGGGTGAATGAAGTGCTGGTGAAGCCGGAGagcctgtgtgtgtctgaggAGTGTGTGGAGGTCAGTGGGGTCACCACTGAGGCCCTCAGCTCTGCGGCCCCTCTGGAAGAGGCTCTCAACCAGTTCAACGAAAGGTTGTGTTcagaaataaacacagatgCAGCCAACTCCTTCTGTCTCTGTACTGATGGTCAGCTGCACCTGCGTCAGGTCCTGCATCCAGAGGCTTCCAACAAGAATGTTCTGTTGCCCGAatgtttcttctcttttttcgaCCTTCGGAAAGAGTTCAAGAAATGCTTTCCATCTGAAGCTGATCATAAGGAATTGGATCTTAAATTCATGACAGATTACCTGAATTTGAGTGAGGATTCCTCTGATCAGGTCTTCACTGCACAAAAGATTCACCAGATGTCCAGCATTGCCCAAGCACTCATCTCTGAGCCTACCTGTCATGTCTTCTCTTGCCCAGAGAAAGTAAATGAGAAGTTTGAAACCGGTACATGCAGCAAGATGGAGCGGATAGATGACAACACTGTGATCAGGGCACGAGGTCTTCCCTGGCAGTCCTCAGACCAGGACGTCGCACGTTTCTTCAGGGGCCTCAACATTGCCAAaggagGTGCTGCTCTGTGTCTGAATGCTCAAGGCAGGAGGAATGGCGAGGCTCTAGTACGGTTCGAGAGTGAAGAGCATCGAGACTTGGCTTTGCAGAGACACAAACATCACATGGGCTCCAGATATATTGAGGTTTATAAAGCCACAGGTGAAGACTTCTTAAAGATTGCAGGAGGCACCTCTAATGAAGTTGCTAACTTCTTGTCGCGGGAGAATCAGGTGATTGTACGTATGCGTGGGCTGCCGTTCACGGCCACAGCGGAGCAGGTTCTGCAGTTCTTCTCTCCATCGTGTCCGGTGACGGACGACGGCGAGGGCATTTTGTTTGTGCGCTTTCCCGATGGCAGGCCCACCGGGGACGCCTTTGTTTTGTTCTCCTGTGAGGAGTACGCTGAGAATGCACTTAAAAAGCACAAGGAGATCCTGGGCAAGAGATACATCGAGCTGTTCAGAAGCACTGCAGCCGAGGTTCAGCAGGTATTAAACAAGTACTCTTCGGCTCCGCTGATTCCAGTTGCCCCCTCCCCGATCCTGCCGATTGTGCCACAGCCCACCTTTGTGCCATCGCCAGCTGCTATTGCTGCAGTAGTTGGAACGAGGGACTGTCTGAGACTAAGGGGTCTGCCCTATGACGCCTCTGTTCAGGACATACTGCTCTTCCTGGGAGAGTACACTGCTGACATCAGACCACATGGAGTACACATGGTGCTCAACCAACAGggACGCCCTTCAGGTGATGCGTTCATCCAGATGCGGTCAGCAGAGAGGGCGCACCTGGCGGCACAGCGCTGCCACAAGCGGAGCATGAAGGAGCGATATGTGGAGGTATTCCCCTGCTCGGCGCAGGAGATGAACATCGTGCTGATGGGAGGCTCGCTCTCCAGGAGTGGCCTCTCGCCGCCGCCATGTCTCACTCCTGCATCGTACTCTTTCCCTCCTGGAGGAGCTGTACTTCCCACTGGAGCATTACTTCCTGCCGGGGCAGTTCTTCCAGTGGAGGCAGCACCTGTATACCCCTCCCAATTCCTGTTGAGTCCTCGCCCCCTAGCACCTGCTTTCTACCCAGCAACCAACCAGATGTATATGAACTACACTGCCTACTATCCAAGTCCCCCAGGCTCCCCACCCAACATGGGCTACTTCCCCACAAGCCACGCCCAATCAGCAGGATCTGTCCTCTCCAGTCCGCCCACAGCAATGATCAGGATGCAAAGCCACACCTCTTCCCATGCCTACCCCAACGGAGTTAAAGAGTTTCTCAGCATGGTGCAGAGCTATCAGcccaGCAACAGTGATGCCTTGGTAACCCTCCCCTCCCTTCTGCCAGCCAAACAGTCCATTGGAGACCAGAGCCTTGGAGGCGGAGCTTATCTGGACTTGCAGCTGCTACATGCCACTTCAATGTAAAATTATAGACCAGCCCCCAGAACCGCAGCAAGTTATATCACTCTAGCTATTTATGTGAAACCTATAAAAAGAATATATGTATttgaaattagatttttttatgtattgcacactgtgtattATTTTGCATTAGTATATGCATTAGATATGTTCTCCTCATAGGCAAATACTGGacatgtgtgtttctgttttgtgcgagtgtgtgagagagtgtgtgctcAAGTGTGGTAGAAAGATGAACTCAATCACTCAGGAAATCCATCAGTGACAATCAGCAGACTCTGCTTAGTTTCTGCCTCCTGCATCAAAACAGACACTTTCCTTTTTCCTgtaattgttcatttttttattatcagttaAAGCCAAAGCATTAGATTTCTACGAGTCTatgagtgagtgtatgtgtCATTTCCTTCAAACATGCTGGTCTgcgcgtgagtgtgtgtgtgtgtgtgtatgcctgCATGTATGAGTGTTTGTACCTATATCCCAACTGATGTGACTGTActatgagtatgtgtgtgtttttatatacagtactgtgcaaaagtcagGGAGTGCCCTTCATTtttaactgtgttaaaaaatgAGCTATTCAATTTTTggacatttattaatataaaaaaatacacaaaaaagtaGCTGCTAAATCTAAATCAATAACTGAATCTAATCTAACTTTTATATGCCCTTCATTCTTTTCAGGAAAcctactttcactttctcttcAGGGAGATTCTTCCACAGCTTCAAAGTTCAGTCTAAAGGCAGAAACACACTAagagcaagacaaaaatacaaaccAAC

Function

symbol description
esrp1 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including digestive system; ectoderm; epidermis; median fin fold; and tail bud. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 109. Orthologous to human ESRP1 (epithelial splicing regulatory protein 1).

NR:

description
epithelial splicing regulatory protein 1-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K14947 ESRP1_2; epithelial splicing regulatory protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007236512.3 True 3221 mRNA 0.49 15 7142368 7172757
XM_007236513.3 False 3208 mRNA 0.49 15 7142369 7172757

Neighbor

gene id symbol gene type direction distance location
LOC103046513 rnf41l,LOC108443277,LOC107593678,LOC107723454,LOC107687809 coding upstream 30423 7101581 ~ 7111945 (+)
pdp1 pdp1,LOC107706250,LOC107687812,LOC107595893,LOC107593682 coding upstream 141176 6991903 ~ 7001192 (+)
ino80c ino80c coding upstream 220006 6918058 ~ 6922362 (+)
trnat-ugu_6 NA coding upstream 474475 6667821 ~ 6667893 (+)
trnat-ugu_5 NA coding upstream 482895 6659401 ~ 6659473 (+)
LOC103022302 LOC108431077 coding downstream 126914 7299671 ~ 7307085 (+)
LOC103022811 LOC108431076,LOC108256683 coding downstream 138545 7311302 ~ 7323743 (+)
LOC103023753 NA coding downstream 154581 7327338 ~ 7333674 (+)
megf8 megf8,LOC107595817,LOC107687796 coding downstream 209393 7382150 ~ 7418932 (+)
LOC103032681 LOC103032681,LOC108431014,LOC107699460,LOC107596612,LOC107706551,LOC107723390,LOC108256284,LOC107657604 coding downstream 356320 7529077 ~ 7595962 (+)
G16969 NA non-coding upstream 93070 6948070 ~ 7049298 (+)
G16968 NA non-coding upstream 215349 6926771 ~ 6927019 (+)
G16845 NA non-coding upstream 240457 6901222 ~ 6901911 (+)
G16839 galnt1,LOC107593713,LOC107657719 non-coding upstream 342232 6689720 ~ 6800136 (+)
G16838 galnt1,LOC107723435,LOC107657719 non-coding upstream 458261 6674715 ~ 6684107 (+)
G17062 NA non-coding downstream 164674 7337431 ~ 7339982 (+)
G17070 NA non-coding downstream 178861 7351618 ~ 7355186 (+)
G17180 NA non-coding downstream 263144 7435901 ~ 7436615 (+)
G17204 NA non-coding downstream 460155 7632912 ~ 7692401 (+)
G17206 NA non-coding downstream 521561 7694318 ~ 7704025 (+)
G16820 NA other upstream 609500 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 964484 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2625059 4515997 ~ 4517309 (+)
nrgn NA other upstream 4971161 2150630 ~ 2171207 (+)
G15839 NA other upstream 5460346 1681159 ~ 1682022 (+)
LOC103032995 NA other downstream 249814 7422571 ~ 7429391 (+)
LOC103041197 NA other downstream 996082 8168839 ~ 8184837 (+)
G17414 NA other downstream 1502862 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 1718487 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 1727183 8899940 ~ 8904004 (+)

Expression


Co-expression Network