G17206


Basic Information

Item Value
gene id G17206
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7694318 ~ 7704025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23209
GTTGGGAAAATCAGCACTACCCTCAACTGCTCCAGTGCGTTCCCCTTGATTCTTTTGATGGAAGCCCGAAGAgttgatagagagacaggataCTTAGATCTTCAGCAAATTAGCAATTTATTACAACAGAGCTCTGGGAACCCCTTCCACTCAGACAGAGTTTCAGTAGAAGAAGTTCAATGATCCTTACATTTGCAAGACCTTATATCCCCAAAATCCCACCCATACATACTGTGCAAAGGTCAGTTAAGCGGTTCCTCAGCAACTGTTTCTAACTGATTaagttaaatcatttattgattACTACTGTTTTCTATGTGTCCTCCGGCCTCATCTCTGCTGCTTAGGCGCTGACTTCTGCATTACATGCTACATACTGGACATTCAGTTTTGAGGTGTCAGCCTAACTGTCCTTTGCACactcacccacatacacagttcAGGTCCAATATCCAGAAACAACTCACTAGTTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23209 True 476 lncRNA 0.43 2 7694318 7704025

Neighbor

gene id symbol gene type direction distance location
arhgef1 arhgef1 coding upstream 4235 7615911 ~ 7690083 (+)
LOC103032681 LOC103032681,LOC108431014,LOC107699460,LOC107596612,LOC107706551,LOC107723390,LOC108256284,LOC107657604 coding upstream 98356 7529077 ~ 7595962 (+)
megf8 megf8,LOC107595817,LOC107687796 coding upstream 275386 7382150 ~ 7418932 (+)
LOC103023753 NA coding upstream 360644 7327338 ~ 7333674 (+)
LOC103022811 LOC108431076,LOC108256683 coding upstream 370575 7311302 ~ 7323743 (+)
lipe lipe,LOC107699484,LOC107595727 coding downstream 603 7704628 ~ 7745239 (+)
tmem145 tmem145,LOC107706472,LOC107723540,LOC107595744,LOC107657707,LOC107593664 coding downstream 45788 7749813 ~ 7827654 (+)
LOC111194782 LOC108257934,LOC108257933,LOC108431011,LOC101066992,LOC107739933 coding downstream 137736 7841761 ~ 7843293 (+)
LOC107196909 LOC108431011,LOC108257934,LOC108257933,LOC107739933 coding downstream 144049 7848074 ~ 7849854 (+)
LOC103029195 LOC108257934,LOC105939654,LOC108257933,LOC101066992 coding downstream 150345 7854370 ~ 7857217 (+)
G17204 NA non-coding upstream 1917 7632912 ~ 7692401 (+)
G17180 NA non-coding upstream 257703 7435901 ~ 7436615 (+)
G17070 NA non-coding upstream 339132 7351618 ~ 7355186 (+)
G17062 NA non-coding upstream 354336 7337431 ~ 7339982 (+)
G16969 NA non-coding upstream 645020 6948070 ~ 7049298 (+)
G17221 LOC108431065,LOC108261516,LOC108257915 non-coding downstream 155859 7859884 ~ 7872227 (+)
G17285 NA non-coding downstream 296998 8001023 ~ 8008808 (+)
G17300 anks6 non-coding downstream 331747 8035772 ~ 8036474 (+)
G17329 NA non-coding downstream 481370 8185395 ~ 8186009 (+)
LOC111194819 NA non-coding downstream 923353 8627378 ~ 8630083 (+)
LOC103032995 NA other upstream 264927 7422571 ~ 7429391 (+)
G16820 NA other upstream 1161450 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 1516434 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 3177009 4515997 ~ 4517309 (+)
nrgn NA other upstream 5523111 2150630 ~ 2171207 (+)
LOC103041197 NA other downstream 464814 8168839 ~ 8184837 (+)
G17414 NA other downstream 971594 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 1187219 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 1195915 8899940 ~ 8904004 (+)
G17443 NA other downstream 1212561 8916586 ~ 8950159 (+)

Expression


Co-expression Network