G17180


Basic Information

Item Value
gene id G17180
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035899.1
NCBI id CM008302.1
chromosome length 74127438
location 7435901 ~ 7436615 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU23172
aaagagtaactgtttattttaccttgagtgtattgacaaatatctttcaataatgattacttatcttagtatctataattacataattattgtgtgaaaccttgtattgtatatgcattaaccaatactcacattatatttgatcatttttactcacagtgtattttacacgcaattatataaaagattaaccaataatcacaatatatcctttacacatatagtaaaacattgtttgatcaggcatgtgactaacacagactttattatatgacaaattaacccacatgatacatttactaacacattaacatataacatgtgagatgtagctcaggcttgaagtattttgtttactgcatgaccctaactaacggtcatcaattcgactggtacggggctaaattgctacaaaaaaggctattagatcaaagcagcctttggatgagtgagtgcctccctaaaaaacctctgcttcaaagaggggggtgacgcacacacacagatagtgccatgAGGTTCCGTTCTGGAGGAACGCAGTCAAggtcaaacactagtggtccagtcagacacgtgaaacttcAGTACTAACAcgtgcatgctaacatgagatgattttaacaacgcctcatcaacaggtttcacgtcatttggggtataaaacatggagtcagatcagaggggggtcagaacttatgctgggacgACTGTTgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU23172 True 715 lncRNA 0.61 1 7435901 7436615

Neighbor

gene id symbol gene type direction distance location
megf8 megf8,LOC107595817,LOC107687796 coding upstream 16969 7382150 ~ 7418932 (+)
LOC103023753 NA coding upstream 102227 7327338 ~ 7333674 (+)
LOC103022811 LOC108431076,LOC108256683 coding upstream 112158 7311302 ~ 7323743 (+)
LOC103022302 LOC108431077 coding upstream 128816 7299671 ~ 7307085 (+)
esrp1 esrp1,LOC107593677,LOC107706288,LOC107657715 coding upstream 263144 7142368 ~ 7172757 (+)
LOC103032681 LOC103032681,LOC108431014,LOC107699460,LOC107596612,LOC107706551,LOC107723390,LOC108256284,LOC107657604 coding downstream 92462 7529077 ~ 7595962 (+)
arhgef1 arhgef1 coding downstream 179296 7615911 ~ 7690083 (+)
cd79a NA coding downstream 256518 7693133 ~ 7701787 (+)
lipe lipe,LOC107699484,LOC107595727 coding downstream 268013 7704628 ~ 7745239 (+)
tmem145 tmem145,LOC107706472,LOC107723540,LOC107595744,LOC107657707,LOC107593664 coding downstream 313198 7749813 ~ 7827654 (+)
G17070 NA non-coding upstream 80715 7351618 ~ 7355186 (+)
G17062 NA non-coding upstream 95919 7337431 ~ 7339982 (+)
G16969 NA non-coding upstream 386603 6948070 ~ 7049298 (+)
G16968 NA non-coding upstream 508882 6926771 ~ 6927019 (+)
G16845 NA non-coding upstream 533990 6901222 ~ 6901911 (+)
G17204 NA non-coding downstream 196297 7632912 ~ 7692401 (+)
G17206 NA non-coding downstream 257703 7694318 ~ 7704025 (+)
G17221 LOC108431065,LOC108261516,LOC108257915 non-coding downstream 423269 7859884 ~ 7872227 (+)
G17285 NA non-coding downstream 564408 8001023 ~ 8008808 (+)
G17300 anks6 non-coding downstream 599157 8035772 ~ 8036474 (+)
LOC103032995 NA other upstream 6510 7422571 ~ 7429391 (+)
G16820 NA other upstream 903033 6532396 ~ 6532868 (+)
LOC103025913 NA other upstream 1258017 6168760 ~ 6177884 (+)
LOC103038305 NA other upstream 2918592 4515997 ~ 4517309 (+)
nrgn NA other upstream 5264694 2150630 ~ 2171207 (+)
LOC103041197 NA other downstream 732224 8168839 ~ 8184837 (+)
G17414 NA other downstream 1239004 8675619 ~ 8716787 (+)
LOC111191971 NA other downstream 1454629 8891244 ~ 8899645 (+)
LOC111191978 NA other downstream 1463325 8899940 ~ 8904004 (+)
G17443 NA other downstream 1479971 8916586 ~ 8950159 (+)

Expression


Co-expression Network