RNA id: XM_007258230.2


Basic Information

Item Value
RNA id XM_007258230.2
length 2099
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC103022608
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8753398 ~ 8777711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCAGATGCTTCCCAGCGCAAAGTCTGACAGAAGCGCAGCTGAAGTGGGTCGATAATTTAAGAGGAGAAACAGTACTGTCATTAAAGCCTTCTGAGaggagaaaacagcaaaacctAGAAAATCTACACCCACCCACGGGCAAGAAAacgggggagagagagagagagagggagggagagcgagCAAGTGAGCGAGCGAGCAAGCAAgcgagtgtgtatgtgagagaaagcgggagagagagagcgagagagagggagaacagTCGATGGATGCTGCTTGGACGGATTGGTCGGTACGTTCTTCTGTGACGAGGACCAGGGAGCTGCAAGGATGGATGGAAAAGGCAGACACATTCCtccagCGATGGTGTGGTGTGAGCGGGGGATCCAGGTGCTCCTCACCATGGTCGGGGCCTTTGCAGCATTCGCACTGATGACGGTGGCCATTGGCACAGACTACTGGCTATACGCGCGGGCATTCATCTGCAACAGCACTGCCAACTCAACTCAGGACGACCCCCACAACAAGGACAAGAAAGACCCCGGAGCCCTCACACACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGGGTTAAAACGAGGCGTGTGCTCCCAAATTAACCATTTCCCTGAAGATGCTGATTACGACCAGGATGCTGCAGAATACCTCTTgcGTGTCGTCAGGGCCTCCAGTATATTCCCTATCCTTAGTGCCATCCTGTTGCTGTtaggtggggtgtgtgtggccTCCAGCCGCTTCTATAAGAACAAGAGACACATCATCCTGGGAGCAGGCATTCTGTTTGTGGTGGCAGGCCTCAGTAATATCATTGGTGTCATTGTGTACATCTCAGCGGCGCTCAGCGACATCTCACCCAAAAAGGATGAGGATAAGAAATGGCACTACTCATACGGCTGGTCCTTCTACTTCGGTGGTCTGTCCTTCATCCTGGCTGAAGTGGTGGGAGTCCTGGCCGTTAACATCTACATCGAGCGGAACAAGGAGCTACGCTGCCGCTCACGCACTGACCTGTTCCGCAGCACCACCTCGGCCGTGCTGCGACTGCCGAGCTACCGCTTCCGCCGCCGCTCCTCCCGCTCTAGCTCCCGCTCAACTGCCGAGCAGCCACGATCCCGGGACCAGTCCCCCTCCGGTCTCGCCGCCAAGAACTTCGGCCCACCTCTGGCTGCTGGACCACCTCCATTCTCCGTGGCCACACTGCCTAACCCGCACACACATTCTGGAGGCgggggtggaggaggaggaggagggggtgtTGGGGACATCTCTATGTATACTCTAGGGAGGGAGGGGAAGCCTCCTATGTATGGTACGGTGGACCGTGCCACGCTCTACCAGCTCCACAACTACTTTCCCACcaaggaaggaggaggaggaggtgccTTAATGACAGGGACCCTGCCCTCGCTGTCCAAGTCCAACCTGGCAGCGTCAGCCAACGCCCCCCTCAATGCCCCGTCTTCCTCAGGCCCTGGAGTCCCGGCGCCCACCCTGTCCGCCGGCTCCACCGCCACCATGGAGAGGGATAGAGGGCTGGGAACGCTGGATAGGCTGGGGAAAGGAGATAGCTCCAACACCAACACTCTGAACAGGAGAACAACACCGGTGTGATGAAGCATGATGGAGTGTGATGGTGGTAAAGGTGGAGATGGTTGGGGTGGGATGGGGAGGGTTAGTGGGTTTTAGAGAAAAAGGATaacaagaaagaagagaaagatggaAAAAGAATGATCCGAGAAAATGGTGTATGCAAACAAtatctgaaagaaagaaaggagcgAAACAAGAGAAGCGAAAGAAAAGGAATGGTCGCCAACCCTGGTCTTGTATTTAACGCTCTGCAAGGTCCTACTAAGGGACTACACTAACTTGCCACACCTTTACCAGCTAAGTCCTTGATTTGCTGGATCAGGTGCATCAGTGTGTTAGGTAAGAAGGTCAGTGTACTTGCTCAGAGGGAGGTGGCATCACAAACTTTTCCATTAGgggtgtaaaagtaaaaaatatataaatatatctatacGGTGGCGATTCAACTGTATCAGTTTCAAACGTTGCAAAAAATTGCATAGATTT

Function

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04873 CACNG8; voltage-dependent calcium channel gamma-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266267 lncRNA upstream 72867 8680267 ~ 8680531 (+) True G196234
TU266206 lncRNA upstream 104766 8647901 ~ 8648632 (+) True G196178
TU266221 lncRNA upstream 184926 8566957 ~ 8568472 (+) True G196193
XR_002651677.1 lncRNA upstream 337901 8414243 ~ 8415497 (+) True LOC111195502
TU266172 lncRNA upstream 338952 8411529 ~ 8414446 (+) False LOC111195502
TU266293 lncRNA downstream 14922 8792633 ~ 8796386 (+) True G196257
TU266295 lncRNA downstream 25407 8803118 ~ 8803846 (+) True G196259
TU266330 lncRNA downstream 71649 8849360 ~ 8849626 (+) True G196286
TU266361 lncRNA downstream 153438 8931149 ~ 8931359 (+) True G196314
TU266364 lncRNA downstream 560358 9338069 ~ 9338819 (+) True G196317
XM_007258232.3 mRNA upstream 13500 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 108331 8507235 ~ 8645067 (+) True LOC103040794
XM_022682997.1 mRNA upstream 347929 8143873 ~ 8405469 (+) True LOC103033741
XM_007253104.3 mRNA upstream 691835 8029959 ~ 8061563 (+) False LOC103032989
XM_022682996.1 mRNA upstream 691835 8035809 ~ 8061563 (+) True LOC103032989
XM_007258225.3 mRNA downstream 73521 8851232 ~ 8871199 (+) True LOC103021572
XM_022683002.1 mRNA downstream 561406 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 756766 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 766989 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 782852 9560563 ~ 9590910 (+) True LOC103027509
TU266265 other upstream 73428 8679284 ~ 8679970 (+) True G196232
TU266158 other upstream 347945 8403598 ~ 8405453 (+) False LOC103033741
TU266161 other upstream 348015 8403598 ~ 8405383 (+) False LOC103033741
trnaq-uug_5 other upstream 1240035 7513291 ~ 7513363 (+) True trnaq-uug_5
TU265741 other upstream 1459705 7293313 ~ 7293693 (+) True G195793
trnav-cac_9 other downstream 158807 8936518 ~ 8936590 (+) True trnav-cac_9
trnav-cac_10 other downstream 158997 8936708 ~ 8936780 (+) True trnav-cac_10
trnav-cac_11 other downstream 159187 8936898 ~ 8936970 (+) True trnav-cac_11
trnav-cac_12 other downstream 159377 8937088 ~ 8937160 (+) True trnav-cac_12
trnav-cac_13 other downstream 159567 8937278 ~ 8937350 (+) True trnav-cac_13

Expression Profile