RNA id: trnav-cac_10


Basic Information

Item Value
RNA id trnav-cac_10
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnav-cac_10
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8936708 ~ 8936780 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTCACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 5349 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 87082 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 132862 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 140322 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 155752 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 401289 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 441137 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 441137 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 444970 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 670742 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 65509 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 158997 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 158997 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 196810 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 291641 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 402337 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 597697 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 607920 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 623783 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 666548 9603328 ~ 9638916 (+) False LOC103046991
trnav-cac_9 other upstream 118 8936518 ~ 8936590 (+) True trnav-cac_9
TU266265 other upstream 256738 8679284 ~ 8679970 (+) True G196232
TU266158 other upstream 531255 8403598 ~ 8405453 (+) False LOC103033741
TU266161 other upstream 531325 8403598 ~ 8405383 (+) False LOC103033741
trnaq-uug_5 other upstream 1423345 7513291 ~ 7513363 (+) True trnaq-uug_5
trnav-cac_11 other downstream 118 8936898 ~ 8936970 (+) True trnav-cac_11
trnav-cac_12 other downstream 308 8937088 ~ 8937160 (+) True trnav-cac_12
trnav-cac_13 other downstream 498 8937278 ~ 8937350 (+) True trnav-cac_13
trnav-aac_11 other downstream 688 8937468 ~ 8937540 (+) True trnav-aac_11
trnav-cac_14 other downstream 878 8937658 ~ 8937730 (+) True trnav-cac_14