RNA id: trnav-aac_11


Basic Information

Item Value
RNA id trnav-aac_11
length 73
RNA type tRNA
GC content 0.49
exon number 1
gene id trnav-aac_11
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8937468 ~ 8937540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttctgtagtgtagtggttatcACGTTCGCCTAACACGCGAAAGGTCCCTGGTTCGAAACCAGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266361 lncRNA upstream 6109 8931149 ~ 8931359 (+) True G196314
TU266330 lncRNA upstream 87842 8849360 ~ 8849626 (+) True G196286
TU266295 lncRNA upstream 133622 8803118 ~ 8803846 (+) True G196259
TU266293 lncRNA upstream 141082 8792633 ~ 8796386 (+) True G196257
TU266271 lncRNA upstream 156512 8741530 ~ 8780956 (+) True G196238
TU266364 lncRNA downstream 400529 9338069 ~ 9338819 (+) True G196317
TU266381 lncRNA downstream 440377 9377917 ~ 9427544 (+) False G196329
TU266382 lncRNA downstream 440377 9377917 ~ 9427544 (+) True G196329
TU266376 lncRNA downstream 444210 9381750 ~ 9382549 (+) True G196327
TU266492 lncRNA downstream 669982 9607522 ~ 9608821 (+) True G196396
XM_007258225.3 mRNA upstream 66269 8851232 ~ 8871199 (+) True LOC103021572
XM_007258230.2 mRNA upstream 159757 8753398 ~ 8777711 (+) True LOC103022608
XM_022682999.1 mRNA upstream 159757 8756943 ~ 8777711 (+) False LOC103022608
XM_007258232.3 mRNA upstream 197570 8694546 ~ 8739898 (+) True LOC103023428
XM_022682998.1 mRNA upstream 292401 8507235 ~ 8645067 (+) True LOC103040794
XM_022683002.1 mRNA downstream 401577 9339117 ~ 9348717 (+) True LOC103023391
XM_007230568.3 mRNA downstream 596937 9534477 ~ 9539304 (+) False mrps21
XM_022683013.1 mRNA downstream 607160 9544700 ~ 9559107 (+) True LOC111195503
XM_022683011.1 mRNA downstream 623023 9560563 ~ 9590910 (+) True LOC103027509
XM_007230566.3 mRNA downstream 665788 9603328 ~ 9638916 (+) False LOC103046991
trnav-cac_13 other upstream 118 8937278 ~ 8937350 (+) True trnav-cac_13
trnav-cac_12 other upstream 308 8937088 ~ 8937160 (+) True trnav-cac_12
trnav-cac_11 other upstream 498 8936898 ~ 8936970 (+) True trnav-cac_11
trnav-cac_10 other upstream 688 8936708 ~ 8936780 (+) True trnav-cac_10
trnav-cac_9 other upstream 878 8936518 ~ 8936590 (+) True trnav-cac_9
trnav-cac_14 other downstream 118 8937658 ~ 8937730 (+) True trnav-cac_14
trnav-aac_12 other downstream 307 8937847 ~ 8937919 (+) True trnav-aac_12
trnav-cac_15 other downstream 496 8938036 ~ 8938107 (+) True trnav-cac_15
trnav-cac_16 other downstream 685 8938225 ~ 8938297 (+) True trnav-cac_16
trnav-cac_17 other downstream 875 8938415 ~ 8938487 (+) True trnav-cac_17

Expression Profile