RNA id: TU1773


Basic Information

Item Value
RNA id TU1773
length 494
RNA type TUCP
GC content 0.42
exon number 2
gene id G1308
representative True

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 4099765 ~ 4101566 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgccGAATAAAATTGTTCCCATCAACTGCTTTACAGTCAAATTATAATACTAACTGAGGTGGAACAAGGCTTAACTAATCAACTATCataaaataatcaacaatatAAAATTTGTAAAATATGATCAAGACCCATTGTGGAGAAACAAATACAGACCACCAGAGCTCGAACCACAGCGCTGACCCgcttcttcttctgctccaactcctccacctcctccctcACCTCCTGCAGCCGCTCCCACACTCACGATCTTCTGCAGGTCTGCAGGACCGAACTCCCCCCGCCGGTTCCGGAGCTCGGAGATCAGCTGCTCGGGCTGCTCGCGGACCGGCCGCATGTCCAGCTCGGGTTTATCGCTGTAGCCCTCCCGCACATGCTCCCACAGGCTGCTCCGCACTCCGCCCGAGGAGCACCGCCGCCCCGCAGCGCCCTGCCCGGCCTGAGGGCGACCCCGACCCGCAGCAGCCCACAGACACACCGCGCTCACCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1759 lncRNA downstream 17982 4079537 ~ 4081783 (-) True G1301
TU1740 lncRNA downstream 89885 4007103 ~ 4009880 (-) True G1290
TU1735 lncRNA downstream 92737 4006162 ~ 4007028 (-) False G1290
TU1703 lncRNA downstream 218034 3879564 ~ 3881731 (-) True G1267
TU1679 lncRNA downstream 449387 3618232 ~ 3650378 (-) True G1247
TU1792 lncRNA upstream 55035 4156601 ~ 4156840 (-) True G1323
TU1793 lncRNA upstream 59913 4161479 ~ 4161873 (-) True G1324
TU1831 lncRNA upstream 165435 4267001 ~ 4269362 (-) False LOC111193794
TU1838 lncRNA upstream 174272 4275838 ~ 4276794 (-) True G1353
TU1848 lncRNA upstream 253307 4354873 ~ 4355132 (-) True G1363
XM_022675272.1 mRNA downstream 46982 4052487 ~ 4052783 (-) True LOC111193716
XM_022675212.1 mRNA downstream 62245 4034456 ~ 4037520 (-) False LOC111193700
XM_022675170.1 mRNA downstream 62245 4034456 ~ 4037520 (-) True LOC111193700
XM_022675108.1 mRNA downstream 94535 3969220 ~ 4005230 (-) True LOC103026864
XM_007237463.3 mRNA downstream 142634 3927100 ~ 3957131 (-) True serpine2
XM_022675554.1 mRNA upstream 20552 4122118 ~ 4127226 (-) True med29
XM_022671270.1 mRNA upstream 48127 4149693 ~ 4207523 (-) True dnhd1
XM_022675781.1 mRNA upstream 112449 4214015 ~ 4220916 (-) True LOC103027148
XM_022675712.1 mRNA upstream 119309 4220875 ~ 4237445 (-) False LOC111193765
XM_022675733.1 mRNA upstream 119309 4220875 ~ 4234769 (-) True LOC111193765
TU1713 other downstream 190102 3900883 ~ 3909663 (-) False wdfy1
TU1203 other downstream 1131288 2910754 ~ 2968477 (-) True LOC103032016
TU1089 other downstream 1545078 2550216 ~ 2554687 (-) False G807
XR_454399.3 other downstream 1665364 2423713 ~ 2434401 (-) True znf414
TU795 other downstream 2226638 1864515 ~ 1873127 (-) True yipf1
TU1837 other upstream 175777 4277343 ~ 4304762 (-) False LOC111193783
TU2412 other upstream 1609770 5711336 ~ 5712686 (-) False LOC103031123
TU2413 other upstream 1611176 5712742 ~ 5721108 (-) False LOC103031123
TU3335 other upstream 5647366 9748932 ~ 9755744 (-) False hspa13
XR_002651630.1 other upstream 6145899 10247465 ~ 10359666 (-) False rap1gap2

Expression Profile